col14a1a (col14a1)


Basic Information

Item Value
gene id col14a1a
gene name col14a1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 21792011 ~ 21882210 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939729.2
ttgactattgcaGCTTTAAGCTAGAAGAACAGCATCATGTCAGATCTAGAAGAAAGACTTAGGGTTTAAGTATTTAATCCACAGGCGACATTATGAGGCAGGACACGCCTCGCTTTGTGGAGGAGACTGACTGTAGCTGAATACATACGAATATTAAGTCAATATCAGCAAAATACGCTAAAACTGCATAACACAAGCTATAAAATTGGACGGTAATGAACATGTTTGAGGATGTCTGAGGTTCGCCATAGCGCTCTCAGGTTTTGAGGCTCCCACCTTTTTTACCTCTCGCGCTCTAATTGGTCGCGCGCTGTTGTTTCTCCGCCGAGCTCGAGGATGAAGCGAGCTGAGGAGCTGAGGAGGAGGCATGAATAAGTAAGGaccagccaaacacacacacacacacacacacacacagtcacagtcaTAGTCACACCACGAAGCTGGCTTTCGGAGCTAACTCTGGGCACAGAGAGGaaagaaggaataaaagacagagCGTTTAAACCTCTGGGTTATTTACCTCAGGAGCACATCTGGATCAGAACGGATTTGTTTTCCTTCAGCTGAATGGTGTGGCAGGTACAGAAGAGGCTCACTGGCTTGATCGTCTGAAGGAATGCAGGTAGTCAGGTTGAGAATGACCGCGTTGTGGCCGCTAATCTTCCTGGCACTGATGCAGTTTGCAGATCCTACAAAAGGGCAAATTGCAGGCCCACGAAGACTGCGATTTAAAGTCATGGGTCCTGACAAGTTGTATGTGTTATGGAAAGAGCCAAAGGGAGAATACGATGGCTATAGATTTATTTACAACAGTGTGCCGGatggagagaggaatGAGCTTCGAATTGGAAAGGGTCAAACCAAGGCAATAATAAATGACTTCAATCCCACAAAGGAGTACAAAGTCAAGGTTATAGCTGTGAGTGGAAGTCAACAAAGCAGAGCACTTGAAGGAAGCTTTGGAGCTCAGGGCCGGGAatttgagagagaaaacaccCAACCACCGAGAATAAAGGAGATGCCTACAGAGGATGGTATTGAACTATCAGGAGTGGATCAGTTTGTGTGCACCACATCTGCGATCGCTGATATTGTCATCCTGGTAGATGGCTCGTGGAGTATCGGCAGGCTCAATTTCCGTCTGGTGCGCACATTCCTGGAAAACCTGGTTAATGCTTTCGATGTGGAAATTGATAAAACCCGTATAGGACTGGCCCAGTACAGTGGAGATCCCAGGATTGAGTGGCACCTCAATACCTTTACCACTAAAGATTCTGTCATTGATGCTGTCAAAAACCTGCCATACAAAGGAGGAAACACACTCACAGGTTTGGCCCTTACATACATTCTGAAGAACAGCTTCAAACCAGAATCTGGTTCTCGAAGCAACGTTCCTAAAATCGGGATCCTGATCACCGATGGTAAATCTCAGGATGCTGTTGACAGTCCTGCCCAGAGCTTGAAGGATGCCGGTGTTGAGCTCTTTGCCATTGgGGTAAAGAACGCAGATGAAAATGAGCTGAAGGTCATTGCCTCTGAGCCACACGATACACACACCTACAACGTGGCCGACTTCAGCATCATGAATACTATAGTGGAGGGTCTGACCAGGACTGTGTGCGAAGGTGTAGAGCAACAAGACAAAGAGATCAGAAGAGATTCAGTCCCTGAAGACACACTAAACTCTCCTCAGGACTTGGTGACGTCTGAAGTGACAGCGCGAAGTTTCCGTGTGTCCTGGACCCATGCACCAGGCAGTGTTCAGAAGTACCGTGTGATTTACTATCCCAGCAAAGGAGGTCAGCCAGAAGAAGTTGTGGTGGAAGGCACAGAGACCTCAGCCGTGCTGAAAGACCTCAGCTCCCTGACTGAGTATGAGATTGCTGTGTTTGCTGTGTACGCAGCCTCAGCCAGTGAGGCTCTCAGGGGCAGTGAAACCACACtggCTCTGCCTGTGGTCAGTGGTCTGGAGCTGTATGATGTTACTCAACACACCATGCGTGCTCGATGGAGGCCTACAGAAGGGGCTACTGGGTACATGCTTGTGTATGCACCCCTAATCAGTGAAACTATTGATGAGACTGAGGTCAAAGTAGCAGACACCGTGACAGACTTTGGGCTGGTGGGTTTAAGTCCGGATACAGAATACACAGTGACAGTCTATGCCATGTTCGGAGATGAGGCCAGCGATCCTGCTACTATGCAGGAGACCACCTTGCCTCTGAAGGCTCCTCGTAATCTTCGTGTCACTGAGGTGGACCACAACTCGGTGCGGCTCAACTGGGATGCACCGTCAAGCACAGTCAAAGGCTATCGGCTGAAGTACGTCAAAAGTAACGGTGCACAAACTAATGAGGTTGATACGGGTCCAGTTTCTAATGTATATCTACGGAACCTGGCCTCCCAAACAGAGTACACAGTGTCTGTGTTTGCAGTGTATGATGGGGATCAGTCAGAACCCCTGAAGGGCGTTTTCACCACAAAACTCGTTCCAGCTCCACGGTCCATTAAGATTGATGAGGTGACACCAAATAGTTTCCGGGTGAGCTGGACACAACCAGGGGACGGAGTGGAGCTTTATAAACTCGCCTGGAGATCCTTAGGAGGAGGAGACACTAAAGAGGTGGTTGTACCAGGCAACATAAATACCTATGTGGTGAATGATCTTTCTCCTCTTACTGAGTATGAAGTGCTGTTGTCTGCTGTCTATAGAGATGAGGCTGAGAGCAGTGCTGTACCTGCTTTAGAGACCACATtGCCCATGCCTGCTACCACAGCCTTCCCCTCTACAACCCCACCAGTCATGCGGCTGGGAGTGACGAATGTGCTGGTGGACGATGAGACCACGAACAGTCTGCAGGTCAGCTGGGACATTGATGATGCAGATGTTGAGCAGTACAGAGTGACCTACGTCAGCCAGAGAGGAGACCGTGCAGAAGAGtcgGTGCTGGTCCGAGGTAGTAGAAAGAGTGTGATATTGCAGCCTCTCCTCTCAGACACAGAATACAAGATCACAGTTAACCCTATTTATCCGGAGGGAGAAGATAGCGCATTCTCTCAGTCCTCCGTTGGCCGTACATTACCACTGACTGCACCCAGCAACCTGAGGGTGTCTGAGGAATGGTACAACCGCTTCCGCCTCACCTGGGACACACCTGCCTCACCCACCATGGGCTACAGGATCATCTACCAGCCTACTTCTGtGTCGGGTCCTGCTCTGGAGACGTTCGTAGGAGAAGATGTGAACACACTGCTGATCCTCAACCTGCTGACTGGCACTGAATACAGCGTTAAGGTCATTTCTTCATACACAACAGGCTCCAGTGAGCCTCTCACCGGCACAGCCAAGACACtgtttcTGGGAGTCAGCGGGCTCAGTACATACCAGGTGCAGATGAACAGCATGTGTGCACAATGGCAGCCTGTCAGCCAGGCCTCCCTCTACAGGGTCACCATCGAGTCCCTGCTcaATGGTCACAGACAGGAGCACAGTTTAAGTGGTGGTGCCTCCAGGCAGTGTTTCTTCAACCTGTCGCCTAACACGCAGTACAAGATCAGCGTCTACACACAGCTACAGAACATGGAGGGCCCTGCCGTCACCATCATGGACACCACATTTCCAGCTCCAACCCAGCCACCAACTCCACCTCCCACCACTGCACCGATTCCCACCATCCCATCAGCTAAAGAAGTTTGTAAAGCAGCCAAAGCAGAGTTGGTGTTCTTGGTGGACGGCTCCTGGAGCATAGGAGATGACAATTTTCAGAAGATCATCCGCTTCCTATACAGCACCACTGGCGCTTTGGATATCATTGGTCGTGAAGGAACACAGGTGGCCATCGTTCAGTTCAGTGATGATGCCAGGACAGAGTTCAAGCTCAGCTCCTACAGGGACAAGGAGTCTCTGCTGGATGCTGTACAGCGCATCACCTATAAGGGAGGAAACACCAAAACAGGTCGAGCCATTAAGCACGTGAAGGAGAGCATCTTTACAGAAGAGGCTGGTGTGAGGAGGGGAATTCCCAAAGTCCTGGTGGTGCTCACAGATGGCCGGTCACAGGACGACGTTAACAAGATCTCCAAAGACCTGCAGACAGAGGGTTACATCATCTTTGCCATTGGCTTTGCTGATGCGGATTACGGGGAGCTGGTGAACATTGCAAGCAAGCCCAGTGAGAAACACGTCTTCTTTGTAGACGATCTGGATGCAGTCAGTAAAATCGAGGAGCAGCTCATAACATTtgtgtgtgaggcagcaacaGCCACTTGTCCATCTTTGCTGATGAGTGGGAATACTTTGGcagGTTTCCGTATGATGGAGATGTTTGGGCTGGTGGAGAAGGACTACAGTAATGTGCAGGGTGTTTCCATGGAGCCTGGAACTTTCAACAGCTTCCCCTGCTACAGACTGCACAAGGATGCTCTCATTTCACAGCCGACCAAATATCTGCACCCTGAGGGACTCCCTTCTGACTATACCGTGTCAGTACTGTTCCGCATCCTACCAGAAACTCCTCAGGAGGCCTTTGCATTGTGGGAAATTCTCAATAAAGCCAATGAACCCTTGGTGGGTCTCATCCTGGACAaTGGTGGGAAAACATTGACATTCTTTAACTATGACTACAAGGGTGATTTCCAGACAGTGACCTTTGAAGGACCTGACATCAGAAAAATCTTTTACGGCAGTTTTCACAAGCTTCATGTGGCAATCAGCAAGACCTCTGCGAAGATAGTCATTGACTGTAAGATAGTGGATGAGAAGCCCATCAGCGCTGCTGGGAACATCACCACAGATGGAATGGAGGTTCTGGGCCGAATGGTGCGCTCGCGGGGCAGCAGGGACAACTCAGCATCGTTTCAGCTTCAAATGTTTGATATTGTCTGTAGTACATCATGGGCCAGTCGAGATAAATGCTGTGAGCTCCCAGGCCTGagaGTAGAGCAAGACTGTCCTGCTCTGCCTCATGCATGCACCTGCTCTCAGGACAGTAAAGGACCACCAGGACCCTCTGGACCTCCAGGTGGTCCTGGTATAAGAGGCTCAAGAGGTGACCGAGGGGAACCAGGCTCAGTGGGACCTCAAGGGCCAACCGGTGAAATTGGACCTCCAGGACCTCAGGGGCCTCCTGGACCACAGGGGCCAAGTGGGCTCTCTATCCAGGGATCACCAGGATCTGcaggagaaaaaggagaaaaaggtgACCAAGGTCTGCCAGGTCCTCAGggtGTGCCAGGAGCCAGTGGAGGTCCTGGCAGAGACGGCCTACCGGGACAGAGGGGTTTGCCTGGGAAAGATGGACCACAGGGACAGCAGGGCCCACCAGGACCTATTGGAAGTCCAGGTGCTCCCGGAGCACCAGGAACCACTGGACCTCCAGGACCACATGGTGATCACGGGCCACCTGGCTCTCCTGGTACCAAAGGCGAGCGAGGGGAGAGGGGTGACATGCAGTCTCAGGCAGTTGTCCGCTCTATAGCCCGACAAGTGTGTGAACAACTAATTCAGAGCCACTTGTCTCGCTACAACTCAATCCTGAATCAGATCCCCAGTCAGTCTGTGTCAGTCCGGACAGTGCCAGGTCCTCCAGGGGAACCAGGCCGTCAGGGCCCTCCGGCACAGGGAGAGCAGGGACCTCCAGGTAGACCAGGCTTCCCCGGAGGTAATGGACTGAGTGGCCGTCCAGGAGAGAGAGGGTTCCcaggagagaaaggagagaaaggcaCTCCAGGTGTGGGGACACAGGGACCCCGTGGCCTCCCAGGACCCCCAGGTCCTCCAGGTGAGGGCCGGACAGGAAGCCAGGGTCCTCCAGGCAGGCCTGGACCTCAGGGCACTCCGGGTCGCACTGGAAGTCCTGGCATCTCTGGTCCTGCTGGACCACCAGGCTACTGTGACCAGAATGCCTGCTTAGGGTACAACATAGGAGTACAACAGTTACCTCCCAGTTCCTACCAAAACTACGGGCCCACTGACACTAATGAtgaagagggagaggaggaagaggacccGTACGGCGGATACCGCCACTACCCACCCCAGTACTACCAGCCCAGCTATCCCAACCCTCGTGTTGCCCAGCCTGGCACTGCTTATCCCGGTGCCATGATGAGGGAGCGAGGCACGCACCGCTTCTCCCGCAGCATGACTGAGAGGAGTGGCACTCAGGCCACAACACAGGAAGAGGATAAATCTGCACACTGACAGCCCcatccagaaacacacacttagtATTAATCAAGTGTCCAGTAGGATAGCATTAACTGAATGGTATTTGGAAAGTGCCTGATGGGGGTGGGTGCTATGGAGGGAGTGGTGCCCACAGACCTTCAatgacctttttttgtttgtttatttaaaaatgcatgcagTCATTTAAAACCACAAAAAGCTCTCAAACAATGCAGTGGATTTGTATTAGTTGTccatttgggggaaaaacattgaatttgtacagtttgtgtaattgtttttataataaaaatggaGATTGAATTTCAGTGCTTCCATGTTTGATCATCCACGCTTTCAATGTTCCTGTCACgtttctgtgatttatttatagaaagatGAATCCTTGGCAGTACCggacaatttaaaaaacacattgaaCCAAATCTAACATTGCCACAGATACTTATAAATGCCACACATGTCTGGAATGTGATTGTACATTGACATGTCAATGTGAATTTCCTGTGGATTTGGTCTTATAAGGATAAATGTTATGCAGTTATTGGGGATTCAGTAAGGGctcttgaactttttttttttttgatttaatACAAGAGCTCAGACTGGAagtccttttctgtctctctctgtgtatgtgctTGTCCTATGGGCCTATTCACTGTGGAAGAGTGTTGAATAGTTAGGCCTGTGGTCTACTGTCCTCTCAGAACGAATCAAACTGTGTGTGCTGAACAGGTGCCAGAGGAATGGCTCACTACCAAATTTTTGAAGCGGAAAAGTAacttatttttactttgttttgtaaccaataaaactgtaatatgaTA

Function

symbol description
col14a1 Enables RNA binding activity. Predicted to act upstream of or within several processes, including collagen fibril organization; homeostasis of number of cells within a tissue; and regulation of cell growth involved in cardiac muscle cell development. Located in extracellular space. Colocalizes with collagen-containing extracellular matrix.

NR:

description
PREDICTED: collagen alpha-1(XIV) chain isoform X4

GO: NA

KEGG:

id description
K08133 COL14A; collagen type XIV alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939729.2 True 7023 mRNA 0.50 49 21792011 21882210

Neighbor

gene id symbol gene type direction distance location
mtbp mtbp coding downstream 20304 21748221 ~ 21771707 (-)
mrps2 mrps2 coding downstream 277656 21509640 ~ 21514355 (-)
setd2 setd2,LOC106606040,LOC107743179,LOC107673014,LOC107685560,LOC107752833,LOC107581536 coding downstream 312778 21455371 ~ 21479233 (-)
ccdc12 ccdc12,LOC107743233,LOC107752847,LOC107581540 coding downstream 419317 21361624 ~ 21372694 (-)
slc6a19b slc6a19b,LOC108270036,LOC107743232,LOC107596751,LOC107685553,LOC107662664,LOC105905464 coding downstream 652741 21131082 ~ 21139270 (-)
deptor deptor,LOC107685573 coding upstream 10937 21893147 ~ 21925684 (-)
polr3c polr3c,LOC107673034,LOC107707173,LOC107743190,LOC107685575 coding upstream 126025 22008235 ~ 22019237 (-)
gba gba,LOC107596705,LOC107598447 coding upstream 150258 22032468 ~ 22038626 (-)
dap3 dap3,LOC106597783 coding upstream 158925 22041135 ~ 22045666 (-)
rusc1 rusc1 coding upstream 205139 22087349 ~ 22101094 (-)
G11974 NA non-coding downstream 256812 21493358 ~ 21535199 (-)
G11961 NA non-coding downstream 268296 21475423 ~ 21523715 (-)
G11973 rbm12b non-coding downstream 298802 21487710 ~ 21493209 (-)
G11970 NA non-coding downstream 308312 21480619 ~ 21483699 (-)
G11806 fhod3,LOC107743170,LOC107662660 non-coding downstream 552735 21238035 ~ 21239276 (-)
G12377 NA non-coding upstream 45249 21927459 ~ 21930143 (-)
LOC113542638 NA non-coding upstream 52473 21934683 ~ 21937785 (-)
G12498 NA non-coding upstream 450915 22333125 ~ 22334604 (-)
G12639 NA non-coding upstream 807766 22689976 ~ 22690185 (-)
G12641 NA non-coding upstream 808761 22690971 ~ 22691193 (-)
rxrbb rxrbb,LOC108267229,LOC108413045,LOC107596638,LOC107581542 other downstream 516670 21263577 ~ 21275341 (-)
G10832 LOC108267614 other downstream 1968328 19816477 ~ 19823683 (-)
trnaq-cug_9 NA other downstream 2045128 19746526 ~ 19746883 (-)
trnaq-uug NA other downstream 2046071 19745650 ~ 19745940 (-)
LOC117597712 NA other downstream 2088851 19702611 ~ 19703160 (-)
aicda aicda other upstream 804197 22686407 ~ 22691804 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other upstream 1019141 22901351 ~ 22908140 (-)
LOC113542417 NA other upstream 1238262 23120472 ~ 23129313 (-)
cxcr3.2 LOC108266514 other upstream 1250716 23132926 ~ 23165584 (-)
cicb cic,LOC107582035 other upstream 1594948 23477158 ~ 23527323 (-)

Expression


Co-expression Network