polr3c (polr3c,LOC107673034,LOC107707173,LOC107743190,LOC107685575)


Basic Information

Item Value
gene id polr3c
gene name polr3c,LOC107673034,LOC107707173,LOC107743190,LOC107685575
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 22008235 ~ 22019237 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939808.2
CGGAACTTTCTACCCGGAAGTGTCTCGGCTGCTTGCGGGGTTGTCTATAGGAAAAGCCATGTGAGTGCTGACTACCAGTGAAAACGTTTACTAACAGCAATTAATGTCTAAGTAAGCACGAGGAAGCGAAGTCAATAATATACTGAAGATGACAGCACAGGAGGTGCGGCTGTGTGGTCTCCTCCTGAAAGAGCACTTTGGTGAAGTGGTGGAGAGAGTTGGAGTTCACCTGCTGCGCAGTGGCGCTCTCAGTCTGCGGGCTCTGGCTCATGAAACCAGCACATCCCTGGACCTGGTGAagaagtgtctgtgtgttctgGTGCAGCATGGTATGTGTAAGTTTGGTCCAGGCCGTCGGGGTCCTGCTGGTCCTGTTGAGTACCAGATTAACTGTGAGCGCATTCTGTACATGCTCCGCTACCCGCGCTACATCTACACGGCTAAGAGTCTGTACGGAGACACGGGAGAGCTGGTTATAGAGGAGGTACTGCAGAGGGGTCAGATGACCATGAGCAGTGTGGTCAGGACTGTAGCAGACAGACTGACACAGAATATGGAGGATGGCCAGAGTATGGACTACAGCGAGGTGATGAATGCATTCTCCCGTTTGGTGGAGACTCATTTCCTTCAGCGCTGCCCTCCAGTGGATAGTTTGGGAGCAACAGTCTTAAGAACATCATGCCCAGGAACTTCTGACTCTCCTGCTAATGCAACACCTCAGCCTGCTCAACCAGAGAGCAACCCAGACTGTTATAAAGTTCCCCAGATCCACCTCACTGGTCGGGGTAAACGCAGGCGATCAAGTGGAGATGCTGAAACAAATGATAGCGGAGCAAAGAGAGCCAAATTGGAAAAGACAGAGCAGTGTGGCGATGAGGGAATTTATTGGCAGGTGAATTTTGAGCGGTTTCACTTGCATTTCCGACATCAGGCCATCATCGGAGCTGTAGCTTCCAAACTGGACCAGACCAGCAGTGAGATTGTCAGGACCATGCTGAGAATGAGTGAAGTGACAACACCAGCTACTGCTGCCTACACACAAGCCGTTTCAGCTAATGAGaTCTTCCGAGCGCTCCCTCCCAGTTACAACATCGGCAGACCCATACTGGACCAGTACCTGACTCTACTGGTGGATGATCcgATGGAGTTTGTGGGTAAGACAGGTGACAGTGGAGGAGGAATGTACGTTGTCAATCTGCACCGAGCGTTGGCTAACCTGGCCAGAGCTACACTGGAGTCTGTAGTCCAGGAGCGATTCGGTTCACGGTCAGCCCGGATTTTCCGCCTGTTGTTACGGAAGAAGCACTTGGAGCAGAAACAGGTGGAGGATTTTGCCATGATTCCAGCAAAGGAGGCTAAAGACATGCTGTACACTTTGCTGTCTGAGAACCTGGTTCAgctacagGAAATCCCAAAGACCCCAGACTATGCCCCTTCCCGTACCTTTTACCTCTACACTGTTAATCAGTTGCCCACTGCCAGACTCCTGCTGCAGAACTGCTACAAGGCAGTGGGTAACCTGATAGAGAGGAGACTGTTTGAGACCAAAgaaaacaaACGGCATTTGGAGAAGTCACAGCGTATAGAAGCAATCCTGGCATCCCTGCAGGCCAGCGGGGCTGAGACAGCTCAGCTGGCTGAGGTGGAAGAGATGATCACTGCACCCGAGAGACAGCAGCTAGAGGCTCTCCGCCATCATATCAACAAGTTGGATTCGAGCGAGAACCAGGTGGATGAGACGATATTCCTTCTAGAGGCTTATGTTAACTCAGCTGCATCCTCACGCTGACACAGTAGTGGATGTTTGGTTAATTAGATCTAGTTCCTGAAGttgggtttgtgtttgtgtctgtgcatgtATGCATGAGGGGAGTCACAAATATGTAAAATTGGCTTTGCTTTGTATTTTTGCTGCATTTACTCAAATTTGTGTAGGTGATTATTTAAGTTATGAGGAAGGACGAATAGTATGTAACTTCTGTCATGCTGGTTTGTGATACCTGTCATATACATGTTTTACCTAgagaactgattattttattacagacatgGACACAAACAGAATatgaacataataataataataatgataatgataatgataataaataaatgtacttgATTTCA
>XM_026939809.2
CGGAACTTTCTACCCGGAAGTGTCTCGGCTGCTTGCGGGGTTGTCTATAGGAAAAGCCATGTGAGTGCTGACTACCAGTGAAAACGTTTACTAACAGCAATTAATGTCTAAGTAAGCACGAGGAAGCGAAGTCAATAATATACTGAAGATGACAGCACAGGAGGTGCGGCTGTGTGGTCTCCTCCTGAAAGAGCACTTTGGTGAAGTGGTGGAGAGAGTTGGAGTTCACCTGCTGCGCAGTGGCGCTCTCAGTCTGCGGGCTCTGGCTCATGAAACCAGCACATCCCTGGACCTGGTGAagaagtgtctgtgtgttctgGTGCAGCATGGTATGTGTAAGTTTGGTCCAGGCCGTCGGGGTCCTGCTGGTCCTGTTGAGTACCAGATTAACTGTGAGCGCATTCTGTACATGCTCCGCTACCCGCGCTACATCTACACGGCTAAGAGTCTGTACGGAGACACGGGAGAGCTGGTTATAGAGGAGGTACTGCAGAGGGGTCAGATGACCATGAGCAGTGTGGTCAGGACTGTAGCAGACAGACTGACACAGAATATGGAGGATGGCCAGAGTATGGACTACAGCGAGGTGATGAATGCATTCTCCCGTTTGGTGGAGACTCATTTCCTTCAGCGCTGCCCTCCAGTGGATAGTTTGGGAGCAACAGTCTTAAGAACATCATGCCCAGGAACTTCTGACTCTCCTGCTAATGCAACACCTCAGCCTGCTCAACCAGAGAGCAACCCAGACTGTTATAAAGTTCCCCAGATCCACCTCACTGGTCGGGGTAAACGCAGGCGATCAAGTGGAGATGCTGAAACAAATGATAGCGGAGCAAAGAGAGCCAAATTGGAAAAGACAGAGTGTGGCGATGAGGGAATTTATTGGCAGGTGAATTTTGAGCGGTTTCACTTGCATTTCCGACATCAGGCCATCATCGGAGCTGTAGCTTCCAAACTGGACCAGACCAGCAGTGAGATTGTCAGGACCATGCTGAGAATGAGTGAAGTGACAACACCAGCTACTGCTGCCTACACACAAGCCGTTTCAGCTAATGAGaTCTTCCGAGCGCTCCCTCCCAGTTACAACATCGGCAGACCCATACTGGACCAGTACCTGACTCTACTGGTGGATGATCcgATGGAGTTTGTGGGTAAGACAGGTGACAGTGGAGGAGGAATGTACGTTGTCAATCTGCACCGAGCGTTGGCTAACCTGGCCAGAGCTACACTGGAGTCTGTAGTCCAGGAGCGATTCGGTTCACGGTCAGCCCGGATTTTCCGCCTGTTGTTACGGAAGAAGCACTTGGAGCAGAAACAGGTGGAGGATTTTGCCATGATTCCAGCAAAGGAGGCTAAAGACATGCTGTACACTTTGCTGTCTGAGAACCTGGTTCAgctacagGAAATCCCAAAGACCCCAGACTATGCCCCTTCCCGTACCTTTTACCTCTACACTGTTAATCAGTTGCCCACTGCCAGACTCCTGCTGCAGAACTGCTACAAGGCAGTGGGTAACCTGATAGAGAGGAGACTGTTTGAGACCAAAgaaaacaaACGGCATTTGGAGAAGTCACAGCGTATAGAAGCAATCCTGGCATCCCTGCAGGCCAGCGGGGCTGAGACAGCTCAGCTGGCTGAGGTGGAAGAGATGATCACTGCACCCGAGAGACAGCAGCTAGAGGCTCTCCGCCATCATATCAACAAGTTGGATTCGAGCGAGAACCAGGTGGATGAGACGATATTCCTTCTAGAGGCTTATGTTAACTCAGCTGCATCCTCACGCTGACACAGTAGTGGATGTTTGGTTAATTAGATCTAGTTCCTGAAGttgggtttgtgtttgtgtctgtgcatgtATGCATGAGGGGAGTCACAAATATGTAAAATTGGCTTTGCTTTGTATTTTTGCTGCATTTACTCAAATTTGTGTAGGTGATTATTTAAGTTATGAGGAAGGACGAATAGTATGTAACTTCTGTCATGCTGGTTTGTGATACCTGTCATATACATGTTTTACCTAgagaactgattattttattacagacatgGACACAAACAGAATatgaacataataataataataatgataatgataatgataataaataaatgtacttgATTTCA

Function

symbol description
polr3c Predicted to enable DNA-directed 5'-3' RNA polymerase activity and single-stranded DNA binding activity. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Orthologous to human POLR3C (RNA polymerase III subunit C).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03023 RPC3, POLR3C; DNA-directed RNA polymerase III subunit RPC3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939808.2 True 2127 mRNA 0.48 15 22008235 22019237
XM_026939809.2 False 2124 mRNA 0.48 15 22008235 22019237

Neighbor

gene id symbol gene type direction distance location
deptor deptor,LOC107685573 coding downstream 82551 21893147 ~ 21925684 (-)
col14a1a col14a1 coding downstream 126025 21792011 ~ 21882210 (-)
mtbp mtbp coding downstream 236528 21748221 ~ 21771707 (-)
mrps2 mrps2 coding downstream 493880 21509640 ~ 21514355 (-)
setd2 setd2,LOC106606040,LOC107743179,LOC107673014,LOC107685560,LOC107752833,LOC107581536 coding downstream 529002 21455371 ~ 21479233 (-)
gba gba,LOC107596705,LOC107598447 coding upstream 13231 22032468 ~ 22038626 (-)
dap3 dap3,LOC106597783 coding upstream 21898 22041135 ~ 22045666 (-)
rusc1 rusc1 coding upstream 68112 22087349 ~ 22101094 (-)
fdps fdps,LOC107673012 coding upstream 83860 22103097 ~ 22110703 (-)
LOC113542354 NA coding upstream 95180 22114417 ~ 22132220 (-)
G12375 crabp2a,LOC108272314,LOC107598461,LOC107596745,LOC108437453,LOC107673000,LOC107685576 non-coding downstream 47936 21872276 ~ 21960299 (-)
LOC113542638 NA non-coding downstream 70450 21934683 ~ 21937785 (-)
G12377 NA non-coding downstream 78092 21927459 ~ 21930143 (-)
G12373 NA non-coding downstream 149395 21857615 ~ 21858840 (-)
G11974 NA non-coding downstream 473036 21493358 ~ 21535199 (-)
G12498 NA non-coding upstream 313888 22333125 ~ 22334604 (-)
G12639 NA non-coding upstream 670739 22689976 ~ 22690185 (-)
G12641 NA non-coding upstream 671734 22690971 ~ 22691193 (-)
G12642 NA non-coding upstream 672051 22691288 ~ 22691526 (-)
G12656 NA non-coding upstream 730376 22749613 ~ 22753941 (-)
rxrbb rxrbb,LOC108267229,LOC108413045,LOC107596638,LOC107581542 other downstream 732894 21263577 ~ 21275341 (-)
G10832 LOC108267614 other downstream 2184552 19816477 ~ 19823683 (-)
trnaq-cug_9 NA other downstream 2261352 19746526 ~ 19746883 (-)
trnaq-uug NA other downstream 2262295 19745650 ~ 19745940 (-)
LOC117597712 NA other downstream 2305075 19702611 ~ 19703160 (-)
aicda aicda other upstream 667170 22686407 ~ 22691804 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other upstream 882114 22901351 ~ 22908140 (-)
LOC113542417 NA other upstream 1101235 23120472 ~ 23129313 (-)
cxcr3.2 LOC108266514 other upstream 1113689 23132926 ~ 23165584 (-)
cicb cic,LOC107582035 other upstream 1457921 23477158 ~ 23527323 (-)

Expression


Co-expression Network