LOC113542345 (LOC108266531)


Basic Information

Item Value
gene id LOC113542345
gene name LOC108266531
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 23186031 ~ 23190084 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939814.2
CATTTTGTGTACTCATAATCCTGAAGATATACTAACTTGCATTTTGAGAttcaaagaaagagaaaagacctAAAGATGCAGCTGGATATGTATATAAATCTGTTGCTGACAATTACAGggCTTGCTCAGGTGGTTACTGCAAgtAAGCCACAGTGGGTAAAGCTCTCAGGTCCCAATGAGGTGATAGCTGGAGTGAGTGCCCTCTATGAGTGTTCTGCAGTCTGCAGTCGTACCTGTTATTATACCTGGAACTTGAAAGGCCAATCATTTCCTGGAAGCAAATTTACCCTTACTGAAAATGGCGTAGACAAGTTCATCTCACTAACATGCACAGTGACAGATGAAGACCATAAGTACTTTGTCAGCAAGATCACATCAGTCACAGTGATAAATCCCATTTCTGTGAAGCCATCAACTGATCAATCAGTACTTAACCAGCAGCCTAAAGTGGGGCGGTCATTTCGTTTAACATGTGATGGGGCCTCCCTACCAGTCACTATAACCTGGATTAAGGATGGTGTACCTCTTACATTAGACTCCAGGATGAGCCTATCCCCAGACAATGTAACTCTGTCTTTTAGCCTTCTGGAAGAGTCAGATAGTGGCCGATATCAGTGCAAGGTCCTTAATGGAAGTGTCAGTGTAATAAGTAAGGCGTACTGGATTTATCTTGGATATGTTGTCATGAGTCTAACTGGGCCAAACCAAGCTGAAGTAGGCATGCAAAGCGTGTACACCTGTGACGCACAGTGTGGGATGGATTGCACTGTGCAGTGGGCCTTGCATGCAGGCTTTCCAAGAGGAAGATTTATTGCTGAGGGACCAAGGATTCTCTGGACCCCCTCTGATATCGGACAGACACAGGTCTTCACTTGTATCACTCTGAACCCGGGAGCAGGCAATATTGGGCAGGTCTCCAAAACTGTGACTGTTGTAGAGGCGCGGCCACACCCCAAGCCCAGTAATGCTGTATCAGCCAAACCCAGTGTAGCCGTGGTGAGCAGTGCAACTCTGCTGATGCTGGTTTCTGCTTGTGTCTGAGGGTCACCACAGAACAATAAGCTCTATACACAGTCCAAACATTGCTACTTCTCCACTATTTGACTTCCTCTGGGTAGAGTTCTCTGAATTTAGTTCACCAAAGTCTTAACACGTCTCTTTTATCTTAATTTGTACtgacatgtacagtatatttaaacataaacaggtaacatttattttgtgattCAGCCTAAATGTCATAGAATGCTCATACTCCTAAACTGCAAGTAGCCTATATGTTTACAGAAACcttttttcagttcatttcaattGTATTTGCATAGTGCTTTAACATAGTGctttaacaatagatattgtcacaGAAATCTGTAGATGTAGAGTTATACCTCTACTAAGCAAGCCAGATGTgacagtgggggaaaaaatactccctaagacgacatgaggaagaaaccttgagcgGAACCAAGCTTAAAATGGAACCAATCATCTCCTGGGAGACAACGGaaagtgggattataaatcattattcttctaaaactgtatactataaagtcaaacagtattaTATGGCTTGAAAGGATGTTGAAAGGAGTATATTGCGAATAAAATTCCTGGGATGAGAA

Function

NR:

description
PREDICTED: hemicentin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939814.2 True 1628 mRNA 0.42 6 23186031 23190084

Neighbor

gene id symbol gene type direction distance location
LOC113542343 LOC108266461 coding downstream 7747 23170400 ~ 23178284 (-)
LOC113542387 LOC108266442 coding downstream 28867 23150719 ~ 23157164 (-)
p3h3 p3h3 coding downstream 160163 23014855 ~ 23025868 (-)
gnb3a gnb3a,gnb3,LOC108266619,LOC108432288,LOC103042898,LOC106605091,LOC106521057 coding downstream 175808 23005511 ~ 23010223 (-)
tpi1b tpi1,tpi1b,LOC107700200 coding downstream 254686 22925553 ~ 22931345 (-)
LOC113542344 NA coding upstream 2418 23192502 ~ 23220929 (-)
LOC117597157 LOC108266480,LOC108266467,LOC108266492,LOC108266426 coding upstream 38859 23228943 ~ 23237579 (-)
LOC117597145 LOC108266480,LOC108266467,LOC108266492 coding upstream 128523 23318607 ~ 23328912 (-)
LOC117597378 LOC108266467,LOC108266480 coding upstream 150349 23340433 ~ 23346183 (-)
grik5 grik5,LOC107717427,LOC107551699,LOC107700189,LOC107671209 coding upstream 158241 23348325 ~ 23418738 (-)
G12917 NA non-coding downstream 54533 23131275 ~ 23131498 (-)
G12819 NA non-coding downstream 247235 22938226 ~ 22938796 (-)
G12816 NA non-coding downstream 257467 22919285 ~ 22928564 (-)
G12808 NA non-coding downstream 316620 22869159 ~ 22869411 (-)
G12805 NA non-coding downstream 322013 22863485 ~ 22864018 (-)
G13361 NA non-coding upstream 315936 23506020 ~ 23506298 (-)
G13369 NA non-coding upstream 337606 23527690 ~ 23527940 (-)
G13424 NA non-coding upstream 624193 23814277 ~ 23816058 (-)
G13438 NA non-coding upstream 720995 23911079 ~ 23912280 (-)
G13452 NA non-coding upstream 831446 24021530 ~ 24021918 (-)
cxcr3.2 LOC108266514 other downstream 20447 23132926 ~ 23165584 (-)
LOC113542417 NA other downstream 56718 23120472 ~ 23129313 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other downstream 277891 22901351 ~ 22908140 (-)
aicda aicda other downstream 494227 22686407 ~ 22691804 (-)
rxrbb rxrbb,LOC108267229,LOC108413045,LOC107596638,LOC107581542 other downstream 1910690 21263577 ~ 21275341 (-)
cicb cic,LOC107582035 other upstream 287074 23477158 ~ 23527323 (-)
dedd1 dedd2 other upstream 469439 23659523 ~ 23674479 (-)
LOC113542286 riiad1 other upstream 952515 24142599 ~ 24149267 (-)
LOC117596842 NA other upstream 1046208 24236292 ~ 24240079 (-)
si:dkey-92i15.4 LOC108265956,LOC108429986 other upstream 1201446 24391530 ~ 24404530 (-)

Expression


Co-expression Network