erfl3 (erf)


Basic Information

Item Value
gene id erfl3
gene name erf
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 23537819 ~ 23579291 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939888.2
ccccgcccccttcccccctcctcctcctcctcctcctccgtgTGGGCGGGCAGAGAAACACGACACcagagacggggagagagagagaggaggaggaggaggaggaatgggGGAGGacagatagagtgtgtgtgtgtatatgtgtatgtgtgtgtgtggtgggaggaggaagaagaagaaaaaaaaaagtcagtgtgaAAGAGGGAGTGGGAAGCTGACTAAATTACTGCGAGTCGGTGGCGACCTTTTTGGAGACGAACTGCTgttacaaaaagaaaatgttcgAAGAAACGCCGACTCGCGTGACCGAGCGCAACACTAAACCCGGAGccggagctggagctggagctgccGTGTGCTTTCCGCTCTCGGCGGGACGGTATTGATCGCTTCTCGGGACGGGAAACTCCGCTTCACCTCGCCCCGTATAGTTTTGTGGACCCACTTCTCACTCTCCAAAAGTGTGAGACAGACTAACCGAAGTGAGCGCCACCGAGCGCGAGCGCGAGCCAGCGGCTGCACATTTTTAGTGAAAGTTTAGTTTCTTTCTCGTTGTTTTTGGCTCGTGAGTGAGGCCGACTCTCGCCCTCTGCCGAACGGGACTCGGCTTGCACACTGAAAGACAACATGAAAACTCCCGGAGAAACGGgGTTCGCCTTTCCAGAATGGGCGTACAAGCCCGAGTCGAGCCCGGGCTCCAGGCAGATCCAGCTGTGGCACTTTATCCTGGAGCTGCTCAGGAAGGAGGAGTACCACGATGTCATCGCCTGGCAGGGGGACTATGGCGAGTTCGTCATCAAAGACCCCGACGAGGTGGCCAGACTGTGGGGGGCACGCAAGTGCAAGCCTCAGATGAACTACGACAAACTCAGTCGAGCTCTCAGGTATTACTACAACAAACGGATCTTGCACAAAACTAAAGGCAAGCGCTTTACCTACAAGTTCAACTTCAACAAGTTGGTCCTTGTCAACTACCCCTTCATAGACATGGGGTCTGCAGGTGTAGGCGTTCCTCAGAGCGCTCCTCCCGTGCCCACAGGTGGAGTGTCTCATTTCCGTTTTCCCCCCTCCACCCCATCTGAGGTTCTCTCCCCCAGCAGTGAGGAGTTGAGAAGCCCGGGCTCTTTCAGCAGCGTGGCACGGCGCCTGGCTCGAGGCTCCGTGTCTGACTGCAGCGATGGCACCTCCGCCAACTCAGAGATTGATGAGGGCAGCCTCAGCGTTGGAACGGCTGAAGAGCGGGTGCCTGAACGCGGATTCAGGAGCGCTGTGCCGCCTCGCCTGACCCATGATGCTCTGTACCGGATGTACGGAAATCACGGGGGTCACAGGGGTCATCGCGCTCACCCGGAGCCACTCTCTCCTTTCGCTCCCGCAGGCTCAGGCCTGTTGGCTCCACCGCCGCTCTCCCCTGCCCTGCCTGTGACAGCGGGCACACACCTGCCCTACACACCCTCACCCACGCTGTCACCGATGCCAGGCTCCATATTCTCATTCAGCGCTGAGGATATGCAGCGCTACCTGCAGGCACATACGCAGAGTGTCTATAACTACCACCTGAGCCCGCGCGCCCTCTTCCACTACCCCAATGTGGTTGTGCCCCAGCCGCAGCGGCCCGAGAAGCCTCTGCCTAGTACCACCGAGCGTCCGTCCGTCCTCACCCACTCATACCCGCTGGCCCCGGCTGACGACGCCCATCACACCCCCTTTAAGTTCAAGCTGCAGCCTCCACCACCAGGCAGAAAGCAGCAGCGTGAGGCACAGGGACACCAGGGTTCCCTCGGCTCTTCCTCCTCGTCTGCCCTCGGCTCTTCGCTCTCTTTTGGCAGTGACCTGAGCTCAGGCATCGTCTCCAACTCTTCATCAAGCGGCTCGCTCAACAGCACAGGCCTACCCAAGATCAAgGTAGAGCCCATCTCTGACATCGAATCTGAGGAGGAGGTTGAAGTCACTGACATCAGTGATGAGgaaggagatgagagagatgaagagtTCTTCTCTCCCCACCGCCGcgaccaccaccatcatcaccaccaccaccacatttTTGGACGCCAGTCCAACGGcacttctgctcctcctcaaTATGATGACTCTGAGGAAGATGTGTTCAAAGCCCCAGCTCCTCCACCACTCTTTGGTCCaccttcctcatcatcatctcgtGGCGGCATGCCTGTGGTAAAGAGTGAGCCGGACACGCCCCCAGCGCCCAGCGGGCATGGGCACGCCCCCTTGCCCTCTCCTTCTCAGTGCATCCCATTAAAACTGCGCTTCAAGCGGCGCTGGGACCAGGAGCAGCACACTGAGGAGGCCGAGGATAAAAAAGTCAGGGGGGACAAAAAGAACGGAGAGAGCAGTGGAGTTGAGAGGGAGGAGAGCGAGAGCTCCGCCCCTCACAAACTGGGCGCTGAACTGCACCGCGCAGCCGCCCAGCTGTCTCTGGAAAACAAGGACTGCTGATGCAAGTGACATGCTGACACACGTGCAGAATGAGCATTGATACCTACAATGGTCAAGAACAATGGCCGCTGATGTTCACACACTCGCAGACGGACATGACTCTTTTTAGAGATCTACGATACTGACAGTTGAATATACACGCACCAGCACTCTTGACGGCAGCCCAGAAACAAAACTGACCCCCCTCTTCACTTCACAAACAAGTGTTTTCATTTCAGAGCTCACCAATGTAAACTTTGTCAGAAGGTGATCGTAATAAGGAAATagtaacacgcacacacacacacacacacacacacacacaccactgacccTCAGGAGACTTTGACAATTGGCACTGGaggacattttttatttttatttttattcagtgaaGTGCCTGCAAACGAATCCCTCAGACACCCacagacagcagagagaaaggCAAAACAAGTCTTGGACTGAAATGATCACATGATCAGCATAAACACACGAGCAGATCAGCTATCATTAGCTTTGGGTGGAGTGTTTGTCTGCTTGTCCTCATCCTCAGAGAGGCACTGTTGTAAATGCTCTACGAGCTGTGCTGTACACGTAACCAGCCTGGCCAAGTTGCTCAGGGACCCTttatggcacacacacacacatgcagacacgcTCACACAACCACATATACATGACTGATAAATCCACCTGTCGCTTGTGTGAAGCCTGCACTGGACTGCATTTCCCTAAAGCTCCTCAGCCGCATGACCATCGATATGTGATAAAACTAGGAGTGTTCACAACGCCTATTGTAACTCCTCAAAGTTTTAACAGTGGATATTGCTTTTTTGTGACAGTTTTGGGAAAGCAAGCTCAGATGGttggaagtgtgtgttgtgatgtttCTGAGTGTTCTCAggatctctcttctctctctatgTAAACCAGCTCACCTCagcgcgctctctctctctccctccctctctctctttctctctctctctctctctctttctctttctttttggcTCATTCTGGGACCAGAAAATACTGTTGTATTCCATTCTTTTTTCTGTGTGGATGAAAGGATTCGTGTTTTACAGCTCTGAAGATTGCAGATCCGTTTGGCTAAATGAAGCTTTGGGATCATAGCCGAGTGGAGCGAAGGTGGatattttgttactttttttttttgttttcttttttttctcctccctttttttaaaacacacattctTGTCCAATGTAGTCACTCGTTCTTAGTTCTCTGCGCTCGCTGTGTGAGTGATCAGCGTGTCATTCGGTGCAGGAGAGGGGCCGGAGGGCTACGCTTTGGGTTGTGTAAGTGTAGGACGTCCTGTGTgggcagtgttttttttgttttggtttgggtttttttttacctgtgtgGGAATTAGAGTTCCTCTCATGTAATCCTACAGAACCTCCTGGGGAATTGTGGGAAGTGTAGTTTTAAGCGTCTTTGTGGCGTAAGAGGCACCTGATTCATCCTTCCCCTACACACTAACAGATAGCATAACAGGCCAGAATTTTACACTGCCTTTTAGCATGTCGAGACGAAAACATGAAAACTCAGACTATACTGTTTTATATCTAAACCTGTTATGTATATTGTATGAATATTGTAAGCTGCAGTTGTGGAACCATAGCATTAACAATATGTAATTATCCAGGGTTTTGAAAgaggttttgttttaaaaggCCTGGATGTCATATATAGGCATTTTTGGGTTGGggttttattttgattaatttttatacatatgtgtgtatgatttaaaaaaaaaaaaaaaaacacagacacaaatagcGAAAGACAAAATCACACCAAGCATTCTATAGAAGCAGAGCTCTGAACCTTACCTGATGCAAGTGCCGCCATTCTGTTctattttaaaagtgtgtgtgtgtgtatatgtgtgtgtgtatgtgtatttgaatgtgaatgtgtgaataaatgaaagagtgAGTGTCAGCCTGCCTTGTCTGTCCATCTCCTGGGTAACCACCAGTCCAGAGTTCAGCATAGTGGACTTCCTGAAGGTCTGTGAACTTTAGCCCAGCTGTGAGGACACTTGTACACAGCATTGGACAAGAGACTGTGTGAGATGGCCAATCAGAACTCGGTGAGGGCGGAGCCTGCATCCTGCCATCAGGAAGAGGCACAGATCCTTTGGGCATGTCGTTCACACTGTACAGTATTTAACTTTTGACAGAACTGGCAAGTTCGATGGCTCCGCTTCTGACATCCACTGTCCCCCATCCTCTTTATGTGACTGATAGTTGCCTTACTCTTTATTCCACAAGTAAAACTGTCCCTTAACCCTTATCCTGCCCAGGAGCCCCGCCTTCTTTTCCTGACCTATTGAATGATTTGTTAGGTCTCCTGACCGGCTGCGCTGAGGAAGGCATTGCTTTGTGTGAGGGACATGGCGCAGGACTACGTATTTTAAGCAGGTTAATTTctctttcgttttttttttttttttttttttttttttttccatatgatGTCAAATTTGCTGTTTATGATAATTATCattattgacatttttattgtttatttttcctcatgtAGTCATACGTTTGGGTTCCTCAAAGAAATGATCTATTTGAGAGCAGAATCTCTTGCCGTTAACCCAACCATGTGTTATACATGTAACAGTTAAACCTTTTTAAAGTTGTAAAATAACTAAAAGCTGTAATTATATTTCAGGCTGTTATAATGGAGACAGATGATAGTGTATGGAGTTAGAGGGGAGACGTATGATTTTTAACTCTGGTCATGTAATTCgttattttgtaatgttactcTTCTGTTGATCTTGcgtgtttctttttcatttgtggGATTACATAATTTGAAAAGAAACTGTATTGCTTTATTGTGTAatggtctttctctctctcttttaccttccttctctctttatttctgtggTATCACAGCTTTTAATGACAGGTTGAGTTTTAATAACaaattgtaacattttaattctcCTTACGTTTGTTGATTTctgatgtttttaaatgtaatcagGGTTAATTAAACTGGTTAATACCA

Function

symbol description
erf Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in head. Human ortholog(s) of this gene implicated in craniosynostosis. Orthologous to human ERF (ETS2 repressor factor).

NR:

description
ETS domain-containing transcription factor ERF-like

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09434 ERF; ETS domain-containing transcription factor ERF

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939888.2 True 5512 mRNA 0.49 6 23537819 23579291

Neighbor

gene id symbol gene type direction distance location
gsk3ab gsk3a,LOC103362704 coding downstream 69907 23449585 ~ 23467912 (-)
znf574 LOC108266406 coding downstream 92884 23427178 ~ 23444935 (-)
grik5 grik5,LOC107717427,LOC107551699,LOC107700189,LOC107671209 coding downstream 119081 23348325 ~ 23418738 (-)
LOC117597378 LOC108266467,LOC108266480 coding downstream 191636 23340433 ~ 23346183 (-)
LOC117597145 LOC108266480,LOC108266467,LOC108266492 coding downstream 208907 23318607 ~ 23328912 (-)
pou2f2a pou2f2,pou2f2a,LOC107671217,LOC107717432,LOC107582157 coding upstream 13288 23592579 ~ 23634925 (-)
atp1a3b atp1a3b,LOC108432319,LOC108266346,LOC107671176,LOC107723432,LOC107582039,LOC107551687 coding upstream 101001 23680292 ~ 23702357 (-)
si:ch73-22o12.1 LOC108266341,LOC108261109 coding upstream 152311 23731602 ~ 23795116 (-)
vars1 vars,LOC107700174,LOC107723495,LOC107717441 coding upstream 248147 23827438 ~ 23847366 (-)
LOC113542255 LOC108266323 coding upstream 271472 23850763 ~ 23853697 (-)
G13369 NA non-coding downstream 9879 23527690 ~ 23527940 (-)
G13361 NA non-coding downstream 31521 23506020 ~ 23506298 (-)
G12917 NA non-coding downstream 406321 23131275 ~ 23131498 (-)
G12819 NA non-coding downstream 599023 22938226 ~ 22938796 (-)
G12816 NA non-coding downstream 609255 22919285 ~ 22928564 (-)
G13424 NA non-coding upstream 234986 23814277 ~ 23816058 (-)
G13438 NA non-coding upstream 331788 23911079 ~ 23912280 (-)
G13452 NA non-coding upstream 442239 24021530 ~ 24021918 (-)
G13465 LOC108266188 non-coding upstream 462963 24042254 ~ 24042606 (-)
G13467 NA non-coding upstream 464153 24043444 ~ 24043657 (-)
cicb cic,LOC107582035 other downstream 10496 23477158 ~ 23527323 (-)
cxcr3.2 LOC108266514 other downstream 372235 23132926 ~ 23165584 (-)
LOC113542417 NA other downstream 408506 23120472 ~ 23129313 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other downstream 629679 22901351 ~ 22908140 (-)
aicda aicda other downstream 846015 22686407 ~ 22691804 (-)
dedd1 dedd2 other upstream 80232 23659523 ~ 23674479 (-)
LOC113542286 riiad1 other upstream 563308 24142599 ~ 24149267 (-)
LOC117596842 NA other upstream 657001 24236292 ~ 24240079 (-)
si:dkey-92i15.4 LOC108265956,LOC108429986 other upstream 812239 24391530 ~ 24404530 (-)
si:ch211-105c13.3 LOC108265907 other upstream 956569 24535860 ~ 24546841 (-)

Expression


Co-expression Network