ddr1 (ddr1,LOC107551675,LOC107723396)


Basic Information

Item Value
gene id ddr1
gene name ddr1,LOC107551675,LOC107723396
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 23934744 ~ 23977540 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940053.2
CTGGGAGAAGAGGACGGACAGCCTGAGCGGCGGTTGGAGCGCTGACTATTCGGTTGAGAAGGAGCGTTAGGAAGTAGTTTACGCGTGATTGTTGACGTTTAAATGACGCCGTTTGCTTTGAAAGTGTACACACGTGTTTACATTTTTAGTGTTTATCTAAAATAAACGCtaaaatctttgttttttttccccctccgtCTGTTCACTAGAGTGAACTCGCACTGCTTTTAGtcgcgcgcgcgtgcgtgtgtgtatatgtgtgtgtatgtgtatgtgtgtgtatgtggaagcGTTAGTGTTTCTGTTAAccttataaaaataataaaagcgtTGGATTTGTACACTAAAGTGAAGAATTCGGATTAAAGCAGGACCAACCGAAAAGTTTTTCCAGCGGCTATCAAATCCGAAAGCTTCTCCTCGCCTGCCTTTTCGGCATGTCTGGGGCAATCACTCCAGACAGGTAACCGGGTGTgttgctgttgccatggcaacacggCTGCAGCCGATGTTGCGTCTCCTCCTTGGCGTGCTCCTGCTCTCCTCGACAACGGCACAAGACCACGAGTGGCATTTTGACTCGGCTACGTGTCGTTATGCACTGGGGATGGAGGATGGAACGATCCCAGATTCTGATATCTCAGCATCCAGTGCCTGGTCTGACTCCACTGAGGCCAAACATGGCAGGCTGAGTACAGGAGAGGGAGATGGTGCATGGTGTCCTTTAGGTTCGGTGTTCCCAGTTCCATCAGAGTATTTACAGGTGGACCTGCGCAAGCTGCACTTCCTGTCTCTGGTGGGCACTCAGGGTCGCCATGCCGATGGGCATGGGCGGGAGTTTGCACGCAGCTACCGGCTCCATTACTCCCGGGACGGCCGCCAGTGGATTACCTGGAAGGACCGCTGGGGCCAGGAGGTGATCTCGGGCAATGAGAACACATATGACGTGGTTCTAAAGGACCTGGGTCCTCCAATCATAGCACGAATGGTCCGGTTCTACCCTTTGGCCGACCGcatgatgagtgtgtgtctgagggtGGAGCTCTATGGCTGCTTGTGGAGTGATGGACTGAAGGCCTATACTGCACCAATGGGTCACATTATGTACCTTTCCGGCTCCCCTGTTTATCTCAATGACTCCATCTATGACGGCAGCGTGGAATCaggggTGTTGTTTGGAGGTTTGGGTCAGCTATGTGATGGGGTGTTAGGAGGGGATGACTTTGCGGAAAGTAAGGAGCTACGGGTTTGGCCGGGTTACGACTATGTTGGCTGGAGCCGTGAAGCGCTGGGCAAACCCACCGTCGACATAGAGTTCCACTTTGAGAAACCACGCCTCTTTCACACCATGCAGGTGCACAGCAATAACAGGCACACACAGGGCGTGCGTGTGTTCTCCGAGGTGTTGTGCGAGTTTAAGGCGAGCTTGCTGAGCCCATGGAGTGAGCCGGCTCTGAGCGTGCACGTGCCCCTGAGTGACCTGCGTGACCCCTCCTCACGCACAGTCACGCTGCCTCTGGGTGGCCGGCCTGCGCACATCCTCCGCTGCCACTTCACCTTCTCTGACCGCTGGCTGCTTATCAGCGAGATCAGCTTTTACTCTGagccgTTTGATAGTGGCTTACCATTACCATCTGTAGCgacccctcctccctccctcactcctcGCTCTCCTCTCCTCACCTCGCCCTCTCTGACCTCTTCCATCTTTCCCAGCACTACCAACTCCAGCAGGCGCCAAATGGGTGATGCTGGTGATGAATTTGCTGCTATCACCCCAAGGGCAGGACTACCTGTTGCTAAGGATGACAGCAGCAACACTGCTATCCTGATTGGCTGCCTAGTGGGCATAATACTGCTGCTATTGGCTGTCATAGTTGGTATTTTATGGAGGCAGTACTGGAAGAAGCTGCTCGGCAAGgcCCAGGGCAGCCTCTCCAGCGACGAGCTGCGAGTTCACCTCTCAGTTCCTTCGGAGAATGTGGTGAtcaataacacaaacacacacacatactccagTCGTTACCAGCGCATACACACTTTCCCTGATGAGACGGACAGAGATGGAGAGTACCAGGAGCCCAGCACTGTGGTACGCCCTCGAGAGCAGCGTGacagcacagCCTTGCTGTTAAACAACCCAGCCTATCACCTTCTTCTGTCTGACCTGAGACATGGCCCCAACAGGCTGCCAAACTGCTCCAGAGAGTCTGTTAAACCCCAAAACCTGCCCCAGGCATGCAGTTTAGATATGGACGATAAAGCCCTGCCTGTTCAGGAAGGCCCGCCCCCATACCCTGGAGCCCCGCCTCCACTCCTGGGGGCTCATTATGCAGAAGCCACAGGGGGTGGGCCCAGTGTGCCTCATTATGCAGAAGCAGACATCATCAGCCTGCAGGGTGTAAGTGGGAACAACACGTACGCGGTTCCTGCCCTCTCGGCCTCACCCACGGAGTGCCCGCCCCTTCCTGAGCTGCAGCGGGAACGGCTCCTCTTCAAAGAGAAGCTTGGAGAAGGACAGTTTGGAGAGGTTCATTTGTGTGAGATTGAAAACCCTCAGGACCTCCCAAATCTTGAGTTCCCTTTCAATGTGAGGAAAGGACGCCCTCTGTTGGTAGCTGTAAAGATTCTGCGGCCTGATGCCTCGAAAAACGCCAGGAACGACTTCCTCAAAGAGGTGAAGATCTTGTCTCGTCTGAAAGATCCTAACATAATCCGgttgctgggtgtgtgtgtgagcagtgaccCTCTGTGCATGGTTACTGAATACATGGAGAGCGGTGATCTTAACCAGTACCTCTCCCAGCGAGTGTTACTGGACAAGACCGGGCCACTGCACAACATGCCAACCATCAGCTACCCTGCGCTAATTTCCATGGCGAGTCAGATCGCATCTGGGATGAAGTTCCTGGCATCGCTTAACTTTGTGCACCGAGACTTGGCCACGCGCAACTGCCTGGTTGGGGGAGAGCGGGGGGAAGGAGACGACAGAACGGGCGAGAGGCACATTAAGATCGCCGACTTTGGCATGAGCCGAAACCTGTATGCCGGAGATTACTACAGGATCCAGGGGAGGGCTGTGCTTCCTATTCGATGGATGGCCTGGGAGTGTATTCTCAtgggtaAGTTCACTACAGCCAGTGATGTGTGGGCATTTGGGGTGACTCTGTGGGAAatgctgagtgtgtgtcaggagcAGCCCTATGGTCACATGACTGATGAACAGGTCATCGACAATGCGGGGGAGTTCTTTAGAGACCAAGGAAGACAgGTATATCTGAATCGGCCGGCAGTGTGTCCCCAGGGCCTGTACGAGCTGATGCTGAGCTGCTGGAACAGAGACTGTAAACTCAGGCCCTCTTTCACACAAATTCACTCTTTCCTCACCGAGGATGCCATGAACATGGTGTAAAGAGATGGATGCATGAGACAAGCGAACCTCTCCTTCACGCAGACAAGAGGTGTTTGTGTAGCCTGCACAAGCTGGTGAAGGTGATAGTTGGTGTAGAAGTAGGCGGAGCTAAGCACTCTTATGTAAATTTGCATAATTTACCTTTGGCAGGTCGGGGCTGAGAGATGCTGCTGGTTCGGTTCTCGTGCTTGACCTGCTTCAGGCCTAgaaccctaatccctacaccctaaacctaATGTTAGTTAATCTGTAGTCCTGAAACTAATCACGAATCTGCAGTTCATCTTAAATCTCTCACTGATAACCATTTTACACTAAAAGGTGGAGGGCTTTTCTATTGCTGAAAACTATATAGACTGTGAATGAAATAGTTTCTATTATTACACGCATAACCTTTGTGATCCcagcaaataaaatgtacttaaaCATAGCACAACaaagaatcaaataaaaaagcagTATGCATAGAAACATTTATAGCAGAGGTAACTGGTAGTTAGGAGTGAATTCTGTCTAATCTCAGTATTCACACTGGGTATGAGGGTTCTTCATTCCGATCTTGAGCCTTTTTGCTGGGTTCAGTGGTTGATGTGTAATTGCTAAATTTGAAACACAAGGCTACAGCACTTCTCTCTGAATAACTCAATAAGCAGTATACATACTTAAGACTGGTTGAGGGATTTTCTGTTTTAGTATAATTACATGCTTATTTTTGGTGTTATTTTCacataataaaatcaaagaCATGGTGCTCCATAACCATTTTGACACATTCTCCAAACTTGCAGCCTCCTCAACAATTTTAGCCTTTCATTACCAATTAACGTCTGTTATGAATTACTGAGCAACTGAATAATTATGTAAACTTGAAAAATAAGTAACATTGTCCAGTGTTGCCAAGTTAATCAAGTGACAAGTCTTCATTGaattaacataaataatataaagtgcTGTAACCGTATAGAATACAGTGCTGGATGGGGCTCCTCCCAATGACTGTATATCCGATGGACAACAAAATCTCTCTGATACACTCGAGCGGCTGGCCGTGATTTTGAACCCCACCCACATCCTTATAGGTAGTGATGATATGTTTGGAAGCTTCATAGCATGTGTCGAGAAGGTCAGGTCAAGGTCGAGGTCTGTATCGATGTTTGTGTAATGATGGCATCGATGATGACGCAAGGATTGCTTCAAAATGGCTCTAGTTGGCAGGTTGTTTCGATTAATCTGTATTCTGAGCATGTACAAGCACAATTACATCTCAAAGCCTCATTGAGAAACCCTGTCACTGGTCAGTTGAAGCACACTAATCTTTTAGATTTTACAGACATCATTATATCAATTACCTATAAAAGCAACAAAACTGTGGAACCACTAATAGCATTATAAGCTCTAACAACATACAGAAGGATATCTCTATCCACATACGCTCCTGCCACTTTAAACACCTGTGCATTCTtgaaattatccaatcagccaatcatgtggcagcattgcaattcataaaatcatgcagatacaggtcaagcgattcagttattgttcacatcaaccattaaaatgtgatcACTGTGACTTTGACTctagcatggttgttggtgccagacgggctggtttgagtgtttcataaactgctgatttccagggatttttcatgcacagcagtctATAGGGCTTACACAGGATGTTacaagaaacaaataaacaaaaaaaaaaacattaattgagcagcagttctgtgggtgggaatggcttgttgatgagagaggtcagacaagaatcgagctgacaggaaggctacgttaattcaaataaccattgtttacagccatggtgagcagaaaggcattTCAGAACACATCAAAACTTCAGGTGGATGGGCTTcgacagcaaaagaccacaggATTCCACTTCTATCAGctaaaaacaggaatctgaggctgcagtgggcacagactcaccaaactGGAAtattgaaaaacagaaaacaggcaGCATTTGatgttaatgtttgatgtgaacatataCTGAAGCTTTTGAGCTGTAGCTGCATGGTTTTATGGACTGGGCTGCTGCCACAcaactggctgattggatatttgCATGTCCAGGCTTTCCTAATAAAAGTGgacagtgagggtgtattatatattttaaagcctAGACTAtgataaaaatggaaaagactTTCCAGAATCCCTTGTTTGACCTGGCTTACATctgctgttgattttttttcttggctttATTGGTCCAAATTTTACACAGGCAGTGCTGTATCTCAGACACTTTTACTGTGTTATGCTTTTTGACCACTAGGAGGCTCTCAAGAAATGACCATTTTTCAACAGGGTTGGCTGGAAAGCTTCACCGCTTCATGAAGCTTCGTCTTGCCATGACTACACAAACTGAAAAGCCCAGGTTGCGCGTGTAGTCCTAAGATTTCACTCGACATTAGTCTCTATCTCAAGATGGTTTTTAAGGAGGAATGTGTTTTATAGAAGTTATTGGATGATATGTATCTGACATGCTAGAACTGATAGAGATAACAGCAGAGAGCTTGTCCATCATTTGACTGTTAATAACTTTGAGCATTGATATAGCAAAGCCTCATCTAGTTGTGCAATCACCTGTTCTTAATGACCTTCAAGAGGATGCTCATTACAGTTTTTCATGCTTACCAAATTCATTTTCCTAAAACACCTTGCAAAGATGAGAAGTGTGACATTTTCAATAATTGaatcaaataaacatcttgtaataagctaataaaaaataataagtattgGTAGTTTTACACACTGTGTTAATAACTTGTTTCTCAGTTGTCCTTGAGATTTTGAATGGAGTTCTTACATTGACTGTGGATGGGCACCCGGTGAACACTCCTCCCCACCTCCTAACTCTGCTGCACAAACACGGACAACTGGGCAATTTTCAATTTAGCTAAATATTGGCTTCAAAACAACACAGTGGGAATCAGTGGAACCTCGTTCTCCACcttatatacagtcattgacTCCACCCTTCTCCACTGCACTACCGTTGACTGGTTAATAATAGGAAATAACATACTTCCCACTACTGCCAGTCACTGTGAAGGTCCAGTAACTTAGATGTGAATTCAGCAGGGACTTACTGTGACTTGTTCTCTGAAACCTTGCTATGAAGTGCTTCATACCGTCAATAAAGATATCACAAACGATTTCCAAGTCGATTTTGGAGGAAGAGTGAAGCGTAAATATGTTTATCAGTAAGTGAAAGATTTATGACTGTTATGCAGTGATTGTTATCCAACCCTACAAGAGGctttatttgcactttactgTCAACTGTGATGTCAGTTGTTACAATCAGCGACAGCAGAGCCGTTACAAACCTTTTTGTTCGTTTTCAGTGTGAATGAGTACAAAAAGTAGATCAGAATGCTGGTTTcagtttttccccattttttagAATTCTCTTGTGGCACTTCAGCAGTGAATTCTTTTTATATCCGACAGATTTGTAGGTTGTGTAACCTACAGATGTTTATGCGTGTATGAGTGGTGGGGTTTGAGGATTATAAAGCCACTAGCTTAACCCTACATACTGTAACATTCAGAAGGAAAGAATGTGATTCACAAATGGTTATGTTGCCATGTCAAATGTCCTTTAACCTTTTGATACACTGTAATCCTGAACTAAAACTTGTATTTTTATAATTCAGATTTCAGGCAGAGTTTTTCAGCTATGCCTTGTGCTCCTGTTTCTTTAATGTAAAGGGATATGAGGATGTGTAAATAGTCAATGGGACATAATGTTGGTTACTGATATTTGGTATCATTGTTGTGAATGGGTCTGAATGGGTCTGTCTCTCTGAGCTTTGCTGACTGTGTTAAATGTTGTTGGCTGTTGtct

Function

symbol description
ddr1 Predicted to enable collagen binding activity and protein tyrosine kinase collagen receptor activity. Predicted to be involved in positive regulation of kinase activity and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be integral component of plasma membrane. Orthologous to human DDR1 (discoidin domain receptor tyrosine kinase 1).

NR:

description
PREDICTED: epithelial discoidin domain-containing receptor 1-like, partial

GO: NA

KEGG:

id description
K05124 DDR1, NEP, CD167a; discoidin domain receptor family member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940053.2 True 7315 mRNA 0.46 18 23934744 23977540

Neighbor

gene id symbol gene type direction distance location
tubb5 tubb,LOC102780606,LOC107700172,LOC107717448,LOC107086735,LOC101486495 coding downstream 16180 23913089 ~ 23918564 (-)
mdc1 mdc1 coding downstream 25623 23891489 ~ 23909121 (-)
si:dkeyp-77h1.4 LOC108266289 coding downstream 43463 23872932 ~ 23891281 (-)
ino80e ino80e,LOC107723407,LOC107700176,LOC107551684,LOC107717446 coding downstream 71821 23856083 ~ 23862923 (-)
LOC113542255 LOC108266323 coding downstream 81047 23850763 ~ 23853697 (-)
gnl1 gnl1,LOC107717451,LOC107671206,LOC107551674,LOC107700168,LOC107723463,LOC107582120 coding upstream 14124 23991664 ~ 24001583 (-)
znf384b znf384 coding upstream 24936 24002476 ~ 24021059 (-)
cops7a cops7a,LOC108432301,LOC107717457 coding upstream 72866 24050406 ~ 24063207 (-)
si:ch73-86n18.1 LOC108266148 coding upstream 87184 24064724 ~ 24069667 (-)
trim108 trim39 coding upstream 93103 24070643 ~ 24075271 (-)
G13438 NA non-coding downstream 22464 23911079 ~ 23912280 (-)
G13424 NA non-coding downstream 118686 23814277 ~ 23816058 (-)
G13369 NA non-coding downstream 406804 23527690 ~ 23527940 (-)
G13361 NA non-coding downstream 428446 23506020 ~ 23506298 (-)
G12917 NA non-coding downstream 803246 23131275 ~ 23131498 (-)
G13452 NA non-coding upstream 43990 24021530 ~ 24021918 (-)
G13465 LOC108266188 non-coding upstream 64714 24042254 ~ 24042606 (-)
G13467 NA non-coding upstream 65904 24043444 ~ 24043657 (-)
G13468 NA non-coding upstream 70563 24048103 ~ 24049660 (-)
G13693 NA non-coding upstream 139450 24116990 ~ 24120764 (-)
dedd1 dedd2 other downstream 260265 23659523 ~ 23674479 (-)
cicb cic,LOC107582035 other downstream 407421 23477158 ~ 23527323 (-)
cxcr3.2 LOC108266514 other downstream 769160 23132926 ~ 23165584 (-)
LOC113542417 NA other downstream 805431 23120472 ~ 23129313 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other downstream 1026604 22901351 ~ 22908140 (-)
LOC113542286 riiad1 other upstream 165059 24142599 ~ 24149267 (-)
LOC117596842 NA other upstream 258752 24236292 ~ 24240079 (-)
si:dkey-92i15.4 LOC108265956,LOC108429986 other upstream 413990 24391530 ~ 24404530 (-)
si:ch211-105c13.3 LOC108265907 other upstream 558320 24535860 ~ 24546841 (-)
LOC113542209 LOC108265814 other upstream 574758 24552298 ~ 24561375 (-)

Expression


Co-expression Network