si:ch73-22o12.1 (LOC108266341,LOC108261109)


Basic Information

Item Value
gene id si:ch73-22o12.1
gene name LOC108266341,LOC108261109
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 23731602 ~ 23795116 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940070.2
GCGCACACACTCGTCtaacctccacacacactcagcactgagGCTTCATCTTCTCCTCACGGGAACGACTGAcaacgataaaaaaaaaacgacaatTCGCTGTTTGGAGGAGCGCGtgcacacaaacaacaacaacaataagaacaacaataacaaaagtAGCGGTTGAGGAcgaaagaggaaagaggaggaAAGTCAGTAAGTTTGTGCTCTAAAAGAGCCCACAGTGGATGCTGGgagttttattgaaaaaaaaaaaaagtccgtCGGAAGATATTTCTGTGTAAAATAGGACTTCTTGAGTGCTTTCTCGCGGAGAGCCTGTGAGAGCctgtgagttgtgtgtgtgtgttcaacaaGCGGGCTACAGACACCATGGTGCGGGACCGCGGCTCGTGCTCGGCGGCAGCCCTCCTCAgcgctctcctcctcctcatcctcacagCGCGAGGCTTACTGGCTCAGAAGGTGAAGGTAGAGCCGGAAGTGGTGTCCTATCCGGGTCAGACGGTGATTCTGCGCTGTCAGTTTCCTGACCCAGGCCAGACCCAGCTCACTCAGGTGTCTTGGATTTTAGAAACGAGCGCTGGCACTCGGACCAACATTGCAGTATTTCATCCACTGTACGGGGTCAATTACCCAACGCCATCCCCAGTGCAGGGGCGTGTGAGTTTCACGATGGATTCCCCCTCTCTGGAAAATCCAACTATTCAGATCACAGACATTGCTCTGACAGATGAGGGGAGGTACATCTGCGAGTACGCTGCGTACCCCACCGGAAACGAAAAGGGGGTAACCTCCCTCATCATACTAGCCAAGCCCAAGAACTCAGCCTCCACAATCACCGTGCCTGCTGGCACCTCTCCTGTCGCCGTAGCACGCTGCGAGTCAGCCAACGGACGGCCACCCGCAACCATCTCCTGGATCACTTCTGTTAATGGCAACGGGTCAGCACTGGTCAAAACGGACAACTCGGACAACACAGTGACGGTGCGCAGCGAGTACTTTCTAAAGCCCACGCCAGACGATAATGGCAAGGACATCAGCTGCGTGGTGACACATCGCACACTGGACAAACCTGAGAGCTTCCCCATGAAACTGGTGGTCCAATatcctCCTCAGGTGCAGATTATAGGATATGACAATAACTGGTATATAGGCCGGACAAATGTGGTGTTGACCTGCCAGTATCAGGGGAACCCCAATCCCCCCACTGTGAACTGGAAAGTGAGCTCAGGCTGGATGCCGGACTCGGTGGAGGTGGCTCAGAATAAACTGACTGTACGGAAGGTGGACGACTCTGTAAACACCACGTTCATCTGCGAGGTGACAAACAGCCTTGGCACCGGCAAGGACCAGGTCACTGTGTTCATCAGGGAAGCACCCATGCCTCCCTCCAATGTGGGTGTGGTAGTGGGCGCAGTCATCGGCAGCTTCCTGGCCCTCCTATTGGTCGGTGCCCTCATTGGCGTCTTGATAACCCGCAACCGCCGGCAACAGCAGGGTTACCGGGGCAACAGCAAGGGGAACTCCGCCCCCTATGACTCAGTGGCTCGTCTCTTCGGCTCCTCAGGCAGCAAGAATGGCACAGGCAATCACGGCAACAATAATGCACCTATCTACAAGGGGGACGTGGGGCTCTCTGAGAAATCAGGAAATATTGGGCTGCACCAGGGGGGCGTGGCCTTGGTAGAAAACACACCCACAGCGCAGGACATTCTGCTGAGCGGCGAGCTGGATGAGGCCGAGCGCAGGAAGTTTGAtgagctggaggaggaggacgagcgTTATGACCAGTTCAGCGGCAGCGGGCCGATCCTGCAGCTCCGCCCACATGACGAGGACCCCAACTCCGCCTACCTGGACGACGACATGGAGTCACAGAGAGATGGCTCTATCATCTCCCGGACCGCAGTCTACGTGTGAGAGTGGAAGaaaggagagatggagagatggcgaaaaagagagagagagagagagaacaaagacTAAAGCGGACCTGCTcccaaaggattttttttcttttggttttaagattattcattttatttctcaaatattattaaaaaaaacacaccagagagacacagaaatggtggctggatggatggattaataaAACGAATACGGGGCAGATTCAGGATGGGGGACTGGACAGAGAGCAGAAACATAAATAAGAGGTTTATACAGTACTTCCTATTTACAGCAATGGTTGTCATGGAGACAATGTCTGAGAGAAACGGAAGACTTTAAATGTGCACACATCATTATCcaaaacacgcgcacacacacacacacacactcgctctctcATACTGAAACACAAGATGATGTTTGTATCCACACTGTGCTTTAGTGGATGTGTGTAATCAGGGTTTGGTcagaatgatttattttattattcttcttattattattcttttttccttttaattctGCCGTGGGACTGTGGAGCAAGTCAGATAAGTCTCTTGCTGTGACCttgcttctctctcttcctttctcttgcTTTGTCTCTCTGGCCCACTATATCCTGTCAGTTAGATGATTGGAGGCTGGACTCTGGACAGACTCTCCTGGTGAAGTGTTCTGTTATAAGCAGTGCTTCTCAAATGATTGGACACACATCAAAGTCTTCATTTTGCCCACTGCACTTAGGTGCATTAGATGAAGGAAAGCAGCAATTAAGGCTCTACTCAACAAATGGCTGTTTTAAAACATCATAAGGGTTTTTGATACATGGTTTGAATGATAATATCAGATGAGTGTGCTAAGTCTTTTGTGCCCTTATTAAATTGATCAAAGCATCATCATAAATTTATCAGCCTTTAAGACCCTTTATCACAGTTTGGGATATCGCCATATTGTATCAAAGAGACGGTTTGCACTGTCTGctttgttttcaaccttcctcgTCTACTAAAAAGGATTCAGTCTTTTCAGAAGGATGAATGTGATATACTGATTCAAAATTGTCCCAAATGAGGAACCTTATAATAAATCTAAGTAAGTCGTAAGGACAAGGAGCACACAAGATGCCCAAAAATGCTGCCTCTTCCTGAACGGAACACAGAGGTACTGATATTTTGAAAGcgttgtgtgtgttaaaaatagAGATTAAATCATTGGGCCGATTATCTGCACATGCCTAATTGAGACAAATCACATTGCATATCTTGCTAATTGCAGTCTATTAATCACAATTTTACttgaaaataattgtttatattttggcatTGTGTATCTGTACTGTCAGACATCCAGCCTCCACTAAATAGTCCTCTTAACGTGTGAATTGCGGATCATATGTTTAACTGGTCGTTTCTGTGAGACCACATTTCCTGTTCCTGATCACTGTCTAAATCTCTCTCTTAATTAGTCCCAAGTGATTCACTTTTAGtgattctctctgattcattcCATTTATAGCGCCACACAGCTCAAGTGCTTATCATTAATCACGACCAGCAAGTCATTTGGTGTTTGCCTTATTTAGGAATGACTAATTGACCCCTAAATCAAAGAATGAAAGGATGGACAAATGAACTTCCTCTGGAAGAGCCATCTGACGCATATGAGCTGGTAGAACTGCTTCCTCACCAGCCAAGGATCCAACTCTAATAAACTCGATGCACATAAAGCCTTGACCTTCCATCTGTGTGCATGGAGAAGCTGTAATTAATTCAGAAAATAATCATTACTGCTACATTGAGCTCTAATCTCTAATTGTACAAAGCTAATTAATCAACtccatatttataaatgcacaCATCCTAATTGGTTGCCATGGCCGCACAGTTAAATATATCTCTTCTCTCACAGTTGGGTTTTTGTATTCCTTTCTTCTAATCCGTTCTTTtcatttatcactttttttGTCACTCGGGCTGAAGGCGGGCGCTATTCatagagagagggggagagataAAGTGTGATGAAATTAATCATTGAGAGAgagtgatcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatattttggtgTAAGGTGTCCACAACATAtgtacacaatttatttttcttaactGAAGATGTTGTGATAAATGTCCGAACATCTATTgtaaataggaaaataaatggACCACTGCTTATTAGGTGTTTTACTCACAGATCCGCCTAAAGTGCATGGCATTAAATGTCATCACAacacaaattttttaaaatccatctGTTCAAGAGCTATATCAATGGGAggtgtattcacacacactctagtaTACTGTAGACACCTATTTTTAGAGAGCGGTGAAGTCTCACCCGCCTATAGAGACCTATTTTAGTGAGTGATGCAGCCTTGttcacacacatatagagaGCCAACTGTCCacctgattgtgtgtgtgtgtgagagtgtgtgtacatgcgtgAGTCAGCATGGTAAACTGTGTCTGAGAGTAGTAATTTCCTCCAGGGTCTtggacccacacacacacacagcataattTAAACTGggcatcacacatacacattcctGTAAATTATCGTCAACTCTGCTGCCCTTGAATCTATAATAGCGTCCCTCACTGAGTGAGAGCAAGGCATGCTGGGTAAAGTAGTTTGCGAGTTGGAGCATCATTCCACAGCAGGATCAGGTTGAGTTCACTCATCATGAGGCTGCATGTCAGCGCTGCTAAAGGGAATCGGTGCTCTGCCGCTGAGGGCTTTAGCGTGCCCGCTGATAATTAGCAGAGAACACATCGACCTTGCGGTGCTCAAGCTCCTCAAGAACCGGAGCAGCTAAGGACAGCACACTCAGAGAATATTAAGGAAGAGGTGTAACCTCTGTGCTAGGAGTCTGCGAAGAAAGTCAAGGTTCTTAGCTCATCAGTTTCATTTCCACAGCTCTTGATCCCTTCGTCCTTCATGCCGTCGTTGTCCACTTTCTgttttaaacctgtgattagaaTCGAAGCCTTAAATGTCACCTGACCAAACCTGTCTCTCTGTACAtagtataaatattataaatatgaacgtgtgatgatgaagaaaaataagaTTGATAATTGATGTCAcgtttttgtgtatatatacatatacatacggGAAGCATGAAGGACcttttatttcttcagttttgACTGACTTGATTTAACagcttttaatttgttttaaaccaTCTTGTCGGTGCTCGATCAGTGCTTTATTGTTGCATTTTGAATTTATGTGCTATGATGCTTATAATAATTCATGATTCTGCTGTGCCCTGTTGGCAAACATTTTCTGACACTTTACCAACTTCACTAAACAATGTTacattttaagatttattttccattttaggGTTGCTAgtctttgtaatgttttt
>XM_026940071.2
GCGCACACACTCGTCtaacctccacacacactcagcactgagGCTTCATCTTCTCCTCACGGGAACGACTGAcaacgataaaaaaaaaacgacaatTCGCTGTTTGGAGGAGCGCGtgcacacaaacaacaacaacaataagaacaacaataacaaaagtAGCGGTTGAGGAcgaaagaggaaagaggaggaAAGTCAGTAAGTTTGTGCTCTAAAAGAGCCCACAGTGGATGCTGGgagttttattgaaaaaaaaaaaaagtccgtCGGAAGATATTTCTGTGTAAAATAGGACTTCTTGAGTGCTTTCTCGCGGAGAGCCTGTGAGAGCctgtgagttgtgtgtgtgtgttcaacaaGCGGGCTACAGACACCATGGTGCGGGACCGCGGCTCGTGCTCGGCGGCAGCCCTCCTCAgcgctctcctcctcctcatcctcacagCGCGAGGCTTACTGGCTCAGAAGGTGAAGGTAGAGCCGGAAGTGGTGTCCTATCCGGGTCAGACGGTGATTCTGCGCTGTCAGTTTCCTGACCCAGGCCAGACCCAGCTCACTCAGGTGTCTTGGATTTTAGAAACGAGCGCTGGCACTCGGACCAACATTGCAGTATTTCATCCACTGTACGGGGTCAATTACCCAACGCCATCCCCAGTGCAGGGGCGTGTGAGTTTCACGATGGATTCCCCCTCTCTGGAAAATCCAACTATTCAGATCACAGACATTGCTCTGACAGATGAGGGGAGGTACATCTGCGAGTACGCTGCGTACCCCACCGGAAACGAAAAGGGGGTAACCTCCCTCATCATACTAGCCAAGCCCAAGAACTCAGCCTCCACAATCACCGTGCCTGCTGGCACCTCTCCTGTCGCCGTAGCACGCTGCGAGTCAGCCAACGGACGGCCACCCGCAACCATCTCCTGGATCACTTCTGTTAATGGCAACGGGTCAGCACTGGTCAAAACGGACAACTCGGACAACACAGTGACGGTGCGCAGCGAGTACTTTCTAAAGCCCACGCCAGACGATAATGGCAAGGACATCAGCTGCGTGGTGACACATCGCACACTGGACAAACCTGAGAGCTTCCCCATGAAACTGGTGGTCCAATatcctCCTCAGGTGCAGATTATAGGATATGACAATAACTGGTATATAGGCCGGACAAATGTGGTGTTGACCTGCCAGTATCAGGGGAACCCCAATCCCCCCACTGTGAACTGGAAAGTGAGCTCAGGCTGGATGCCGGACTCGGTGGAGGTGGCTCAGAATAAACTGACTGTACGGAAGGTGGACGACTCTGTAAACACCACGTTCATCTGCGAGGTGACAAACAGCCTTGGCACCGGCAAGGACCAGGTCACTGTGTTCATCAGGGgGACACCCTTGGTAGAGAAGGGGCCTGCTACAGGCAGCATAATTGGTGCCTTTATTGGAGTCATCCTCTTCATCGCCCTCATCGTCACCATTGTGGTCGTGGTCCGCAAACAACGCATGAATAGAGAtggtcCTCCCACTCACaagcctcctcctcctcagaaGCACACTAAGATCTCCTACAATgcTGTGCAGGCACCCAACAGCAGCGTTCCACTCGCATACTATGAGACACAAAGTACAGAACCAGTGACGGATCTGGACTCGTACCACGGTGATGATGACGATCAGCCGAAGACATTTGACCACGACGCCAGCTCTGGCTTGGCGGAGAGCGAGGTGCTCCCCCCGTATTATGAACTCAGGGAGATGGATGTAGGGACTTATGCTAATGAACAGGAGCAAAACCCTTCGTCCTTATCCAGGGAGGACAGTTTTATGTCCGCTCCCATGATTGTGTAGGAAAGATTACACAGAGTCCTATacactggagagaaaaagagagagaaaagagagagagagagagagagtgaagtcAATCACCCTTGTGATTTTAGATGTAAAGTTGTCTTTCAgttcttttaaatgtttaaggataagattaaataaatccAAAGTCTGCTTTGTGACTATCTTCAGTCTGGAATAATACTATTGCCTGTGTATGAGATTAACTTTGCAAATCCAAATAAGGCAAATACAACAGTTCCTATGAAATTCCAATCCTATGGCTCCAGGTTGTCTTACATCCACCAATTCTTTACTCTCACATCGCCACTTCCTTCCTGTGTTAAACTCCCATTCAGCAATGATTAACACATGAGTGGGGAAATAAAAGCATAACCCCTCGGTCATCTTTTCATAGGCTTTTACAATATTCCCaaaaatatagcaaaatataaatatataaattatattgtaCTCTCCATTTCATAAccatcagaaataaataaaaaaaaaaacataaatggatAATGCAAGCTTGGTAACAACAGTAGCCGTTGCTTCATGTCGCTTGTTGGTATGAACCATGTTGGCTACCCTGAGTGTTAGTCATCACGAaccaacaaaaatattaatctgACTTTCTAAAGCTCATTTGCTGGCTTTTTAACAAACACATTAGGATTAACTCAAGTGAAACAAGTCAAGTGTTCCCTAACTACCTATTTTTTTTAGCCTTCTGAGAAGCATCTTCATGTAGATGTCTTCCTTAGTAAttcttaattttgtttcttgcatgtgtcttttttttggaaagattTGCCTTTATTTTGTACTGAACATGATGGCAAAATATCATTCTTTACTCTCACATCGCCACTTCCTTCCTGTGTTAAACTGTGTACATTGTACACCCTGACAggacacaacaacaacaataatgtcAATTATCTGCGATTTGCACATAAGATAATGATATAATGTCCAAATAACACTGATTTTCAGCTGTGCCAATATTTGTGCAAGGCAGTGACTGTGTACTGTAAAGCTTCACTTCCTTACCGTCTTTGCTGGACTTTAGGTCGCTCTCTGTATGTGTAGTTATTCGTCTTTACTGCTGTTGACATCAGTGAACCACTGAATCAATGTGACTGATTTTGTTTATATCAGGAGGGCATGGTTGTAGCATTTTTTATACTCATCCAggagtttttcttctttagcatTTTGTTGGTAATTGGActtttatacaattatttatacaattataatTCTGCAGAAACCATTCTCTAATATTCTAGACTTTTTGTTTGAATGTCAACTCAAAATCAGTTTATGATTTCTTTAATCTTCTGTTATGAATTTTTGAGCAGAAGGTTTTTTCTGTTGTTCCTTCAGATACTTTTGTACTGTGACAAgcacaacatttaatgtttttttttcctctgctgcTATTCTCTTTGTTACTACAATAAACACTGTTTATCTATCTCA

Function

NR:

description
nectin-2-like isoform X2

GO: NA

KEGG:

id description
K06531 PVRL2, CD112; poliovirus receptor-related protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940070.2 True 5354 mRNA 0.45 7 23761373 23795116
XM_026940071.2 False 3315 mRNA 0.44 10 23731602 23795116

Neighbor

gene id symbol gene type direction distance location
atp1a3b atp1a3b,LOC108432319,LOC108266346,LOC107671176,LOC107723432,LOC107582039,LOC107551687 coding downstream 29245 23680292 ~ 23702357 (-)
pou2f2a pou2f2,pou2f2a,LOC107671217,LOC107717432,LOC107582157 coding downstream 96677 23592579 ~ 23634925 (-)
erfl3 erf coding downstream 152311 23537819 ~ 23579291 (-)
gsk3ab gsk3a,LOC103362704 coding downstream 263690 23449585 ~ 23467912 (-)
znf574 LOC108266406 coding downstream 286667 23427178 ~ 23444935 (-)
vars1 vars,LOC107700174,LOC107723495,LOC107717441 coding upstream 32322 23827438 ~ 23847366 (-)
LOC113542255 LOC108266323 coding upstream 55647 23850763 ~ 23853697 (-)
ino80e ino80e,LOC107723407,LOC107700176,LOC107551684,LOC107717446 coding upstream 60967 23856083 ~ 23862923 (-)
si:dkeyp-77h1.4 LOC108266289 coding upstream 77816 23872932 ~ 23891281 (-)
mdc1 mdc1 coding upstream 96373 23891489 ~ 23909121 (-)
G13369 NA non-coding downstream 203662 23527690 ~ 23527940 (-)
G13361 NA non-coding downstream 225304 23506020 ~ 23506298 (-)
G12917 NA non-coding downstream 600104 23131275 ~ 23131498 (-)
G12819 NA non-coding downstream 792806 22938226 ~ 22938796 (-)
G12816 NA non-coding downstream 803038 22919285 ~ 22928564 (-)
G13424 NA non-coding upstream 19161 23814277 ~ 23816058 (-)
G13438 NA non-coding upstream 115963 23911079 ~ 23912280 (-)
G13452 NA non-coding upstream 226414 24021530 ~ 24021918 (-)
G13465 LOC108266188 non-coding upstream 247138 24042254 ~ 24042606 (-)
G13467 NA non-coding upstream 248328 24043444 ~ 24043657 (-)
dedd1 dedd2 other downstream 57123 23659523 ~ 23674479 (-)
cicb cic,LOC107582035 other downstream 204279 23477158 ~ 23527323 (-)
cxcr3.2 LOC108266514 other downstream 566018 23132926 ~ 23165584 (-)
LOC113542417 NA other downstream 602289 23120472 ~ 23129313 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other downstream 823462 22901351 ~ 22908140 (-)
LOC113542286 riiad1 other upstream 347483 24142599 ~ 24149267 (-)
LOC117596842 NA other upstream 441176 24236292 ~ 24240079 (-)
si:dkey-92i15.4 LOC108265956,LOC108429986 other upstream 596414 24391530 ~ 24404530 (-)
si:ch211-105c13.3 LOC108265907 other upstream 740744 24535860 ~ 24546841 (-)
LOC113542209 LOC108265814 other upstream 757182 24552298 ~ 24561375 (-)

Expression


Co-expression Network