znf628 (znf628)


Basic Information

Item Value
gene id znf628
gene name znf628
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 22695703 ~ 22702675 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940104.2
TGAGAGCCGGAAGCAGGCGGGTGACTGTTGGTTAGTTTGTGCTCGACATTATTGTTAAGGTTGTATGGACTATCACTGCGGACTTCAGCCCCCGTTTCAATACATCAAAACTGTTTAGTAAAATTAATCATTACAGGCAAGTGACATATGCATAGTGAATGTGCTGAAATATCGAGAAATTCTGCGACGCTTGAGAAAGCAGGACGGCAGGGAGATGGATGCGGGAAGGCCGGCTCGTGACTGGACAAATCCATGCACACATCGCTAAGAGAGGAAGCAAATGATGATTTCTACAACATTATATACTGTGAGGTTCTGGCAACTGAAGTGAAGAAGTTACAGTACTCATTTCAGCTTGGATACACAACATCAGCAACACTCCATACATCTAAACATCTGCAATGGCTGCCGTCAGTTTGGAGGATCCACAAGACTAGTAATCTGCACTACGACCCAGAGCGTCCTCCTCTGCTCGTAGGGTACAATGGCCAACTCTGTTGCTACCCTGGTAGTCCAAACGGAGCTTCTTCCCAGCCAGGCTCCCTCGTCCCTCTCTCCTTTTCCATCGCTTCTTCCCTTCAGTGGAAGAAGAGGATAACGATGAAGAGAAAGGTGGAGATGAAGAGAAAGGGACAGAAACCGTTGTGCTTACGGGAGTCGAGATGGTGACGTCGTCGACGTCTCCAGGGACGATGGGGTCCCAAAATCCTGAACACCCCTTTCAGTGTCTAGattgtgggaagagttttaagTGGTCTTCCAGGTTGGCACATCATCAGCGTAGCCATAACAACGAGAGGCCATATCGTTGTAACCTCTGCCCCAAGGCTTTCAAAGGCTCATCTGCTCTGCTCTATCACCAGAGGTCTCATTCAGGAGAGAAGCCTTATAAATGTGAGGATTGTGGTAAAGCATTTAAGCGCTCGTCTCTCCTCCAGgTCCATCGCAGCGTGCATACAGGTTTGCGTACCTTCCAGTGTCCCTACTGCCCTCTCACCTTCAAGTGGAGCTCTCACTACCAATATCACCTACGCCAACACACAGGCGAGTGCCCTTATCCATGTGACAGATGCCCCAAAGCCTTCAAGAACTCCAGCAGCCTGCGTAGGCACAAGAACGTGCATTTGGGTGTCAAGCCGTATGTCTGTATGGTGTGCAGCAAGGCTTTCAGCCAGTCAACCAACCTAAGGCAACACATGCGCATACATACGGGCGAGAGGCCATACATCTGTGGTGAGTGTGGTCGCAgcttcacacactcctccaacCTGGCGCTTCATCGCAACTCTCACATAGAGGTCAAGGCTCAGGGCGGGGGGAAGACAAGAAAGGCAGGGTCACGGACGAATGTGGAGGTGGTGCTCGAGGGGGCGACCTCAGACGATTTGAAGGCGGTTGAAATGACCATATCGGACATGGTGGGCCTTGTAGGTGGGCAGGAGGGGGGAACTAGTCAGGTGTTCCTATCTCACCATGTGCCCTCGTCCTGTACGCCATCCTCGGCTGAAGGCAGCCAGAATGTCCTGACAGCCACAGGCGCAGAGCATGTACAGGTGAGCATGGAGGAGTCAAGGGAAACAGGTGCTAATGTGTTGTTGTACAGCTGCGGCAGCTGCAACGAGACATTCGGAACCCAATCACACCTGGAAGAACATCAAGCCTTGCATCTGCACAGCCTGGGGACGGGGGATGGGGGCGAAGACATCAGAGGTGATGGCATAGAGGCTCAGGGAGGTGGGGTTTCATTGGTTGGGATGGCCCCCTTGTTGGCGGACTTTGAGGAGGTGGTGGAAACCACGACAGTGTCAGAGAGTGGGCAGGGGACAGAACTACTTGGATTGGGTGGTATTGGGGGTGGATCGGGTCAGGTTCAGTATGACTTGCTCCAGAGCTTCACCAGCTCTGTGGCCCAGATGCCCTCAGATGACACCACATCCATAGTGGACACGACTGTGGCTACATTGTCTACAGAGTGTGCCTACTGCGGTAAAAGGTTCAAGAACAGCAGCTCGATGAGCAGACACATGGCACAGGTGCACCCTCTGGCACTGTCCCAGTCCAGATCTCAgttcagctgctctgtgtgtgacCGCTCCTTCCCCCTGCTGTCGTCCCTTCTTACCCACCAGCTCTCGCACACTGAGGAGCAGAGACTGCTGGCTGAGGCAGAGGCTGAGATAGTCTGCCCTCCCTCACTGTCCCTCTCACTGCCTCTGTCTTCCTCGTCCTCTGccaagagagagggggaggagggggagggagaaagggagaTCCATGTCAGCCTCATTGCTGTCACAGAAGAGGGAGAGAAGCAAGCTGTGAAACCAACCAACAGGGCATCAGGGAAGGCTGGAAGAAGAGGAGGCGGCAGCAAGGGCTCTGCTGCAAATAACGagaGGCCATATCGGTGCTTGGAATGTGGGAAATCCTTTAAGGGTTCATCAGGTCTGCGCTACCATATGAGAGACCACACAGGAGAGAGACCGTACCGCTGCACAGAGTGTGGAAAAAGCTTTAAGAGGTCATCTCTACTGTCCATACATCAAAGGgtgcACACAGGAGTGCGAGCCTTCCAGTGTCCCTACTGCCCTTTGACCTTCAAGTGGAGTTCACATTACCAGTACCATTTGCGGCAGCACACCGGTGAGCGGCCCTATGTGTGCCAGGAGTGTGGCAAATCATTCAAGAACACCAGCTGCCTGCGGCGGCACAGCCAGTTGCATTCGGGCCTGCGACCACATGCCTGTTCTGTGTGCGGCAAGGCATTTTCGCAAACTTCCAACCTAAAGCAACACGAGCGCACACACTCGGGCGAGAGGCCTTTCCAATGCGCGCAGTGCCACAAGAGTTTTACACACTCCTCCAATCTTCAGCTTCACCTACGCACACACTCCTCACGCAAAGACTACAAGTGTCAGCGCTGTGGAAAAGAATTTGTCATGCACTCCTACCTGCAGCGGCACCTGCGGACGCACAGCAGCGGTGGAGGGGCCACATGCACAAAAGAAGCAGGGAAAACCACTAAGAATGGCAGTGGAACCTCGGAGATGTCAACTACTACTCTGAGTCTAAATATGAATGCAGGAGGAGGGCTCAGTTCTCTGTTTTCTAATGAAGGGAATTccacactcattctctcaccatCAAATTTGGACATTCCTCCAAATACGtcacaaaattattttatgatcCAGACACCCACAGGACTACAGCTGATCCCGCTGTCCAATCCAACACCCACACAGCCTGTCCCGGcccctccacctcctcctcctccacctccaccaccaccaccaccaccacaactgCCATCCCAGAACTTCCTGCTTCTTCAGTGCCAGTCCACCAATGGGAGCCAGCCGAGTCTTATTCTTGTTCCCACAGCATCCAATACGAACACTCTTCCTGCTCCCTCAGCACCACAGCCCCTCCCCTTGGTGCAAACTATACCAGCACTGCCACAGATAACCACTTTAGCTCCAGCCCAAACCCAGATATCACATTTTCAGCCACTCCAGACCCAGCAGAGGTTTATTTTAACCAACAACAGTGCTCCCCTCATCACTGCCCCACCCCAAAACACAAAAGCCATTACTAGACCAATTTTAGGAACGCTTAGCCACACCAGGAGCCCTAGACCCAGACGTGGGCGCAAAACTAAAACTCAGAAATCTGGGTCCTTGGTGCAGACAGCGTCTGTCCCAGCAAGTCAAGGATTAGTTCCTTCCACTATTTCAACAACCACAACTGCTGCTTCTGTTGCATCTTCAACAACCTTGTCCCAGCAACATAATGTTCCAACATCTGTGCCACCACTGAATTCAGATTCTGTACCTGACACACCCTTGGCCCCTGCTACTGTCACTGTATCAGCAGTGACCCCAACTACACCCCCAACGGACAGCCACTGTATTTTGACAGGTGACCACCAAAATGCTTCCGCTGCAGAGGAAGTGCAGAAACTTCCAGAGACAATACCAGAGGAGcgttttgttctgtgttttgaGAAGGAGACTGAGGAGAGAGAGCAAGGAGACGAGATGGAGGTGAAGGTGGAGATGAATGAAGGAGTAGAGGGAGAGAGGTCGTATGTGTTACATTTTGAAGGAGAAAGTGAACATGGGGAAGAAGGAAGTGAAGACAGAGGGGAGAAATCATACGTTCTCCGATTTCATTCAGAGGAAGAGATGGAGGGTGatggagaaaaggagaaaactgGGATGGTTTCTCTTAATTTGCTACAAGATTGGAGTAGAGCGAGGGAAAGTGAAAGAATAGCAGGGTTTGAAGAAGGTGTTGGGGTGGAAGAGAAAGCATTTGTTCTTCATTTCCAAACAGATGCTCCAAGTGACGAAGATGTTCCACCAAATGCTGGCTTTCCTGAAGGCCCTAGTGAAGAATTGGGTCTTTCTTGCCATCCTGCCCAAGCCTTAATGCCTCTTGGTGGACAGGAGGTTGTGTTTGAATTAGGCAGTGAGGCCAAAATAGATGCAGACACAGGCAGTGGGGAAAGTGTTCAAATGATTGCAGTCATAGAAGGTGGGGGCAGCAGTTCTGAGACGGGAGGCAGTTTTACTAATCCTGGGGGAGTCACTGGGACAGGAGCAGGGCAAATGGGGAGCATATTTCAGCTAGAGGGAGGAGAAGGTATTGTTATTATTGAGGTTAGTACCAGCAGTTTGACAGAAGGAACAGAAGGAGTTGCGGTAGGATTAAGGAACATGGACAAAGAAGGCACTGCATCACAGGAAGTGGCATCGGAGGAGCAGAAGATACTGGAAACTGAGAGCAGACTATCAGCCAGTGTGAACGGGACCTAAGACTAAGCTCAGAAGGAATCTCAAAATGAAGCCTGTGTATTGctctaagacacacacacacacatggtcctACTAACCAATGCACACTACTAACTACCAGCAACCTGAGTCTTTGATGACACACATATTTTTAATGATGCCTTTTATGATCCAGATGACTAAACCTAAAGCAGTTATTTAGGCCTCTGTCTTTCAGCTATCAGGAAAGTGAAATGAGGGAGAAGCCATGCTTTATAGCAAGAATTGACAGGCAAATGCATGGAAAAATCGCTTTTGGTGCAATGGTTGATCTTTTTATGTTGTCCTCTTACTTCAGTCTCTTGGAGTGTTCTGAGCACTACCTAGAATAAGGTGAGAGTTACTCACCAGCCCATAGAGGGAGTCCTTtcatacaccacacacaacagatatgaactttttttttttttttttttttttctttccaaatacTACACTTAGAAGGTGAATTGAAGAGGAGTTGCTGAAGAATGTTGGACAACTGTAAACTAATATGCTGTCATGTTGACAGCCCAAGTGTAACATGAACAAGAACTGTGAATATGTCTATAGTCTGTTTAGTTTCAATATAATTGATATTAGTAAATTATCATATTCAACAAA

Function

symbol description
znf628 Orthologous to human ZNF628 (zinc finger protein 628).

NR:

description
LOW QUALITY PROTEIN: zinc finger protein 628-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940104.2 True 5441 mRNA 0.50 7 22695703 22702675

Neighbor

gene id symbol gene type direction distance location
nat14 nat14 coding downstream 174 22693318 ~ 22695529 (-)
necap1 LOC108266771,LOC108432353,LOC108235531,LOC102221296,LOC103478044 coding downstream 9419 22673777 ~ 22686284 (-)
epn1 LOC108266800,LOC108437491,LOC107598387,LOC107724817,LOC107672968,LOC107549476 coding downstream 51018 22620574 ~ 22644685 (-)
u2af2a u2af2a,LOC108437489,LOC107724853,LOC105894993,LOC103024792,LOC107692567 coding downstream 93162 22594548 ~ 22602541 (-)
cacng6b LOC108266843,LOC108437488 coding downstream 105987 22582095 ~ 22589716 (-)
il11a il11 coding upstream 1547 22704222 ~ 22709373 (-)
rasip1 rasip1,LOC107549479,LOC107724795,LOC107744292 coding upstream 29000 22731675 ~ 22746065 (-)
LOC113542546 NA coding upstream 157590 22860265 ~ 22872115 (-)
LOC113542545 NA coding upstream 173012 22875687 ~ 22885619 (-)
LOC113542547 NA coding upstream 184519 22887194 ~ 22892627 (-)
G12642 NA non-coding downstream 4177 22691288 ~ 22691526 (-)
G12641 NA non-coding downstream 4510 22690971 ~ 22691193 (-)
G12639 NA non-coding downstream 5518 22689976 ~ 22690185 (-)
G12498 NA non-coding downstream 361099 22333125 ~ 22334604 (-)
LOC113542638 NA non-coding downstream 757918 21934683 ~ 21937785 (-)
G12656 NA non-coding upstream 46938 22749613 ~ 22753941 (-)
G12657 NA non-coding upstream 52063 22754738 ~ 22756614 (-)
G12797 NA non-coding upstream 122325 22825000 ~ 22829871 (-)
G12805 NA non-coding upstream 160810 22863485 ~ 22864018 (-)
G12808 NA non-coding upstream 166484 22869159 ~ 22869411 (-)
aicda aicda other downstream 3899 22686407 ~ 22691804 (-)
rxrbb rxrbb,LOC108267229,LOC108413045,LOC107596638,LOC107581542 other downstream 1420362 21263577 ~ 21275341 (-)
G10832 LOC108267614 other downstream 2872020 19816477 ~ 19823683 (-)
trnaq-cug_9 NA other downstream 2948820 19746526 ~ 19746883 (-)
trnaq-uug NA other downstream 2949763 19745650 ~ 19745940 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other upstream 198676 22901351 ~ 22908140 (-)
LOC113542417 NA other upstream 417797 23120472 ~ 23129313 (-)
cxcr3.2 LOC108266514 other upstream 430251 23132926 ~ 23165584 (-)
cicb cic,LOC107582035 other upstream 774483 23477158 ~ 23527323 (-)
dedd1 dedd2 other upstream 956848 23659523 ~ 23674479 (-)

Expression


Co-expression Network