mrps2 (mrps2)


Basic Information

Item Value
gene id mrps2
gene name mrps2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 21509640 ~ 21514355 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940137.2
GTCATACTTGTAGTCCGTGTCCTTtgtggtttttttccccattatgaCATCATTACCCAGAATGCTACTCGGCTGACCTTCAGTGGGAGGAGACACGGGGAAATCGGAAGCATGGCTGCAGGGATACTAACCAAAgTAATCCAtggtgtgaggagtgtgaggagtgtgaggcaGGTGGGATCAGTGTTCTCCTGCAGCAGCCACACATACACCACTGCTGCCAAACCTACACCTGCTTTTCACAACCAAGATGCTGATGTGAATGATAAGATCATGAACTTTCCTCTGACCCAGCCGGACTTCTTCAGTGTGTCTGAGCTCTTTACTGTAAAGGACCTGTTTGAGGCCCGAGTCCACCTTGGCCACAAGAAAGGCTGCAGGCACAGaTTGATGGAGCCCTATCTGTTTGGTACACGCCTGGACATGGACATCATTGACCTGGAGCAGACCGCATCCCACCTACAGCAGGCTCTGAACTTCACAGCACACGTGGCTTACCGCGGCGGCATCGTGCTCTTTGTAAGCCGCCGGCGCCAGTTCACACACCTGATTGAATCTACAGCGCAGCAATGCGGTGAATATGCTCACGCTCGCTACTGGCAGGGAGGTGTGCTCACCAATGCCAATGCCACTGGGGTGCGCCTTCCTGACCTCATCATCTTCCTCTGTACACAAAACAGTGTCTTCCAGACACACACTGGCGTACGCGATGCCGCCAAGGTCAACATTCCCACAGTGGGCATCATCGACTCAGACTGTGACCCAAGCCTCATTACGTATCCAGTGCCGGGCAACGATGACACTCCGGCTGCAGTGGAGCTGTACTGCCGTCTGTTCAGGATGGCTATCAACAGGGCAAAGGACAAGAGGAAGCAAATGGAGCTGCTCAAGGGGATAtgaacaaaagagagagagagagagagagagagagagagagtctagATACCCACAGAGACATGAGGATAAGTTTAAGTTCTGCActtaatctgaattttttttgtcagctgGTCATCACAATTCAGAGCATAGTGTTGCTCTAGTTCTTGGTCcttgttgatattttttttcccctcccctcAAACACACCACTGATAGAATCAGCTAATTATCAAACCCAGCACCACCTCTGGGTGTGTCCAAGCAGGGATTCACTAAAATGTGGAGTGTATGGTATCCTCAGGATTGGGTTGGAAAACCACTGTATCCCAACTCTCACCGAGATAGAGCAAAAATGTAGACCATCTCTGAGGCACTGAGGACTGGGTTAAGAATCCCCATTATATCTCAACAAGTAGCCAAGGATACTGAAAGTCTCCAGGATTTTTTGTGTATCATGTTGAGATTTGATGTACTATTAAACATTTGGGTTCCATCACTAAGTAAAATTAACGTTTCTGATTAAA

Function

symbol description
mrps2 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 36. Orthologous to human MRPS2 (mitochondrial ribosomal protein S2).

NR:

description
PREDICTED: 28S ribosomal protein S2, mitochondrial isoform X2

GO:

id name namespace
GO:0006412 translation biological_process
GO:0015935 small ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02967 RP-S2, MRPS2, rpsB; small subunit ribosomal protein S2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940137.2 True 1403 mRNA 0.49 4 21509640 21514355

Neighbor

gene id symbol gene type direction distance location
setd2 setd2,LOC106606040,LOC107743179,LOC107673014,LOC107685560,LOC107752833,LOC107581536 coding downstream 30407 21455371 ~ 21479233 (-)
ccdc12 ccdc12,LOC107743233,LOC107752847,LOC107581540 coding downstream 136946 21361624 ~ 21372694 (-)
slc6a19b slc6a19b,LOC108270036,LOC107743232,LOC107596751,LOC107685553,LOC107662664,LOC105905464 coding downstream 370370 21131082 ~ 21139270 (-)
LOC113542399 LOC108270030,LOC108415428 coding downstream 378693 21120820 ~ 21130947 (-)
si:ch211-254p10.2 LOC108262958,LOC107752844,LOC103366948 coding downstream 391224 21112866 ~ 21118416 (-)
mtbp mtbp coding upstream 233866 21748221 ~ 21771707 (-)
col14a1a col14a1 coding upstream 277656 21792011 ~ 21882210 (-)
deptor deptor,LOC107685573 coding upstream 378792 21893147 ~ 21925684 (-)
polr3c polr3c,LOC107673034,LOC107707173,LOC107743190,LOC107685575 coding upstream 493880 22008235 ~ 22019237 (-)
gba gba,LOC107596705,LOC107598447 coding upstream 518113 22032468 ~ 22038626 (-)
G11973 rbm12b non-coding downstream 16431 21487710 ~ 21493209 (-)
G11970 NA non-coding downstream 25941 21480619 ~ 21483699 (-)
G11806 fhod3,LOC107743170,LOC107662660 non-coding downstream 270364 21238035 ~ 21239276 (-)
LOC117597063 NA non-coding downstream 629826 20870795 ~ 20879814 (-)
LOC113542610 NA non-coding downstream 642754 20865805 ~ 20866886 (-)
G12373 NA non-coding upstream 343260 21857615 ~ 21858840 (-)
G12375 crabp2a,LOC108272314,LOC107598461,LOC107596745,LOC108437453,LOC107673000,LOC107685576 non-coding upstream 357921 21872276 ~ 21960299 (-)
G12377 NA non-coding upstream 413104 21927459 ~ 21930143 (-)
LOC113542638 NA non-coding upstream 420328 21934683 ~ 21937785 (-)
G12498 NA non-coding upstream 818770 22333125 ~ 22334604 (-)
rxrbb rxrbb,LOC108267229,LOC108413045,LOC107596638,LOC107581542 other downstream 234299 21263577 ~ 21275341 (-)
G10832 LOC108267614 other downstream 1685957 19816477 ~ 19823683 (-)
trnaq-cug_9 NA other downstream 1762757 19746526 ~ 19746883 (-)
trnaq-uug NA other downstream 1763700 19745650 ~ 19745940 (-)
LOC117597712 NA other downstream 1806480 19702611 ~ 19703160 (-)
aicda aicda other upstream 1172052 22686407 ~ 22691804 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other upstream 1386996 22901351 ~ 22908140 (-)
LOC113542417 NA other upstream 1606117 23120472 ~ 23129313 (-)
cxcr3.2 LOC108266514 other upstream 1618571 23132926 ~ 23165584 (-)
cicb cic,LOC107582035 other upstream 1962803 23477158 ~ 23527323 (-)

Expression


Co-expression Network