znf574 (LOC108266406)


Basic Information

Item Value
gene id znf574
gene name LOC108266406
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 23427178 ~ 23444935 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940143.2
CGAGTCCATTCTCCCAGTGACTCACAGCCAAGTTTCTCTAAGTGCCATTCTATTGGTGGAACGGAAACCTTCTGTTGACCAATCACGTAGCGTGTTGTTGAAACGTTCCTAATATCATTTCAGGTCCAAACCAGTAAGGCTGTATTGGACATGGAGAGCTCGTCAGTGTACATGTGTTTCCCATGCTACCGGGAGTTTCCCACACTAGAGGAAGTGTTGACACACCAGCTGACCTGCACCGCTGAGAACACACAACCTCTGCCTGTTGGCACTGCTATAGAGGCTGCTGCCATCTCTGCTGGTCTTCCACAGTTGGAAGCTCAGTCATTGTATGTTCCTGAGGTTCAGACTGAGAGGAAACCTGTACCCTCCTCAGATGTGCCACGCGTCCTCTACCAGTGCGCTGACTGTGAGCTCCTCTTTGATGCACTGTTGCTATGGCAGCAGCACCGAAAGCTTGGCTGCGGCCTGGAGACCGGACCTGGACCTGGACCTGGACCTGAGTACATGGCTGCCACTTCAGTGCCGCAGTCCATCAGCGAGACGGTCACACATGAGAGTGAAGTGGCCTATAGTGACCAGCCAGTTGAGTCAGAGGGAGGAGCCAAACAGGAAGCAAGCGTGGAGACTTTTACAACAGTGAGCGCAGAACTAACGGACATAAGTGCTGAAGATGTTCCACAGCTGAGTTTACCAGGCAGCAGTGATCCCCCTGAGCCCTCTGAGGAGTCTGCGCCTCAGCTTCCTGAGTGCACTGAGCCTGTGCAGGAACCAAGCCCGCAAGTGAGACGGAGAGGCCAGAAGAAGGCCAAGCCTCCCTCTAGCCttctgtgtgtggagtgtggcCGCTGCTTTAGCTTGGCTTCAGAGCTGGTGACTCACCGGAAGACGGCGCACAACCTGAAGGAGGCCATCCACCGGTGCACTGTGTGTGGCGAGGGCTTCCTCAACACCACGCTCTTCCTCTACCATCGCAAGCAGCACCGCAGTCAAACACAGGAAGAGGAGCAGAAAGAGGTGGAGGTGCCTCAGCTCTCCACCGCCCTGCTGGAGGCTCCAGGAGAGGGTCTGCTCTTGCTCGCCACCGCCGGAGAGGGCCAGAGTCTGATGGAAATCACTAGCTTGGAGCAGACATTACCTGAGGCTGTGCCCATCCCTCAGGTGGAGGTAGAGCTCGATCCTGAGATTAGAGGCGAAGACATCCAACCAAGCGGAGATGAACCTTTGCCTCAGGCAATTGAAAGGGAACAAATAGAGGAGACAGAAGTTGAAGGGATTGTCAGCATcgaagtggagaaaatggaagaGGAGGAAGTTGAAGGCAGAGCTGAGCCCACAAATGAGGAAGTAGTTGAAGAGAAACAAGTGGAGACAGAGACTAGCAATGTGGATATGGCACAGACCGATGAGGCAGCATCTTCTGTGCTTTCCACATGCCAGAATTTCCTGTGTAGCCAATGCGGGTGCACTTTCAATGGTGAGCACGAGTTAGCAAAGCACCGCAGTAGTGAGCACGGACTAGCGGAGGCGCTGCACAGTTGCACAGAGTGCGGCCAGGAGTTCATGAGCACCACTCAGTTTCTGTACCATCGAAGAGAACATCGCAAGAATGTGCCCTCTGCTTCTGCTAGACTGAACGCCACCCTCACCTCTCTGGTCAAACACCCTTCTGCATCCCCCACCCTCCTGCTTCGACGGCCAGAAACCTTGAGTGAAACGACGCTGCCTGACGCCACGCTTGAGGCCACAGCCAAGTTGAGCCGTGATTGGTCACGCACGCCGCTCCCCCATGAGTGCCCGCATTGTGGGCAGGGCTTCACGCGGCGCAGCCTCCTGCGCGAGCATGTCTTCCAGCACACGGGCGAGAAGCTTTTCAACTGCAACGTGTGTAACAAGAGTTTCCCAACTCCCGCTGGCCTGCTGCGCCACAGCCTGTGCCACGGTCCACCACGCTCCTTCACCTGCCCCGTCTGCACCAAGACCTTCTCTCAGCCTGCCTCGCTCAAACGCCACATGCTCACCCACGAGGAGGGCACAGAGAGGAAAGGCCAGGGGCGCAGCAAAGGGCGAGGACGTCCTCCTGGAGACACCCGTCTGCTCACCTGCCCCGACTGCCCAGCCAGCTTCAAGCTGGACTCCCAACTGCAGATGCACAGGCTGCTGCACACTAGTCACCCTTTCCCATGCACTGTGTGTGGACAAGCATTTAAGCGGCGGAAAGAGCTCGACCTGCACTCTCTCATGCACCAAGATAAGGAGCCTGTGGTGTGTGCTCAGTGTGGCTCTCAGTTCCTGAACCAGGCCGTATTAGATGTGCACATGCAGCGCTGCACAGGAGAACCCTCTCAGCGGCGCCGTTATAAAGGTCATGGGCGTGGCCGAGTCGGGGGTCAGCTTGAGTGCGATATGTGCGGCCACCGTTGTGTGACACAGGATGGTCTGGATCTGCACCGGCTCTCGCACACGGGCCAGACGCCGCTACGCTGCCCTCTTACACCCTGCAGGAAACGATTCGCCTCCAGCTCGTCCCTGGCACAGCACGTGGTGGCACACTGCCGCGCGCCACTGTCCAAGAGAAACACTCCACGCCGCTTCACATGCAATTTCTGCACCAAAGAGTTTGCCTACGCCTCCACCTTCGCCGTGCACATGCGCACTCACACGGATGAGAGGCCCTTTGAGtGCACGCATTGTGGGAAGCGTTTTCGGCAGCTGCCCCACCTGCAGGATCACGAACGTATCCATAGTGGTGAGCGGCCGTTTGTGTGTTGGGTCTGTGGGAAGAGTTTCAGCGTGGCAGCGCGGTTAGCCGAGCATGCCCGCGTGCACAGCGGTGAGCGCCCATTCGCTTGCCCCCGTTGCCCCACCGCCTTCCGCTCACGCCCCAATCTCCACAAACACCTCCGCCTGCACGCCAGTGACCCCAATGACCCCACCATTGACGCCACTGCAGACCAAGACTCGGCTGTACAGACCATCCTGCTGGTGCAGGAAGCCGCCTCACCCACATCCACACCGGCCATGGCGTCTACCTCCACCGCCGTCCCAATCATCCAGGAGGGCGCACTCATGCCCGAGCAGCACGGTGCCTCTGTGGTGTTCCTCCATAACAACATTGCAGTGCCTGCAGTTACCATGCCCACTATATCAGTAGTGACCGGCCAAGACGTCCCGCACACCATCGAGTTCATTATAGAGGAGactgtgtagagagagagagagtgagagaggtgaAGGGaatggaaaggaaagaaagacagagagagattggaACCATTTGTGAAATGGCTTCAGAGACGGGCACAGAGATAACTTAAGGTTATCTAGgcaagaaagagaaggaaagagagaatgagcTGAGGTTAAAACCTTCCAGGATAAAGcttttctctctgtatgtgtagaaaagaaaaagttagCTGATGCTTGGTTTAAATAGCTGTTACTTTTTTGGACTAGCAGAACCAGAACTCATCAACTACGCTGAAATTGAGGAAAATTGAGCATGGTGTTTACGAGCTTGTATATATTTAAACCACTCTGTCCTCATTTGAGTTTGTCATTATTACCTTTGGCATGAGTTGCTCATAAagtttatagtgtgtgtttttaataaaaacaatttggCTTTCTGGGCTTCCTCGCCTTGATTTCTGTTTTAACAAGTGCAGACATGATCATGCTTTTC

Function

NR:

description
PREDICTED: zinc finger protein 665-like isoform X1

GO:

id name namespace
GO:0060216 definitive hemopoiesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940143.2 True 3688 mRNA 0.55 7 23427178 23444935

Neighbor

gene id symbol gene type direction distance location
grik5 grik5,LOC107717427,LOC107551699,LOC107700189,LOC107671209 coding downstream 8440 23348325 ~ 23418738 (-)
LOC117597378 LOC108266467,LOC108266480 coding downstream 80995 23340433 ~ 23346183 (-)
LOC117597145 LOC108266480,LOC108266467,LOC108266492 coding downstream 98266 23318607 ~ 23328912 (-)
LOC117597157 LOC108266480,LOC108266467,LOC108266492,LOC108266426 coding downstream 189599 23228943 ~ 23237579 (-)
LOC113542344 NA coding downstream 206249 23192502 ~ 23220929 (-)
gsk3ab gsk3a,LOC103362704 coding upstream 4650 23449585 ~ 23467912 (-)
erfl3 erf coding upstream 92884 23537819 ~ 23579291 (-)
pou2f2a pou2f2,pou2f2a,LOC107671217,LOC107717432,LOC107582157 coding upstream 147644 23592579 ~ 23634925 (-)
atp1a3b atp1a3b,LOC108432319,LOC108266346,LOC107671176,LOC107723432,LOC107582039,LOC107551687 coding upstream 235357 23680292 ~ 23702357 (-)
si:ch73-22o12.1 LOC108266341,LOC108261109 coding upstream 286667 23731602 ~ 23795116 (-)
G12917 NA non-coding downstream 295680 23131275 ~ 23131498 (-)
G12819 NA non-coding downstream 488382 22938226 ~ 22938796 (-)
G12816 NA non-coding downstream 498614 22919285 ~ 22928564 (-)
G12808 NA non-coding downstream 557767 22869159 ~ 22869411 (-)
G12805 NA non-coding downstream 563160 22863485 ~ 22864018 (-)
G13361 NA non-coding upstream 61085 23506020 ~ 23506298 (-)
G13369 NA non-coding upstream 82755 23527690 ~ 23527940 (-)
G13424 NA non-coding upstream 369342 23814277 ~ 23816058 (-)
G13438 NA non-coding upstream 466144 23911079 ~ 23912280 (-)
G13452 NA non-coding upstream 576595 24021530 ~ 24021918 (-)
cxcr3.2 LOC108266514 other downstream 261594 23132926 ~ 23165584 (-)
LOC113542417 NA other downstream 297865 23120472 ~ 23129313 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other downstream 519038 22901351 ~ 22908140 (-)
aicda aicda other downstream 735374 22686407 ~ 22691804 (-)
rxrbb rxrbb,LOC108267229,LOC108413045,LOC107596638,LOC107581542 other downstream 2151837 21263577 ~ 21275341 (-)
cicb cic,LOC107582035 other upstream 32223 23477158 ~ 23527323 (-)
dedd1 dedd2 other upstream 214588 23659523 ~ 23674479 (-)
LOC113542286 riiad1 other upstream 697664 24142599 ~ 24149267 (-)
LOC117596842 NA other upstream 791357 24236292 ~ 24240079 (-)
si:dkey-92i15.4 LOC108265956,LOC108429986 other upstream 946595 24391530 ~ 24404530 (-)

Expression


Co-expression Network