Item | Value |
---|---|
gene id | pou2f2a |
gene name | pou2f2,pou2f2a,LOC107671217,LOC107717432,LOC107582157 |
gene type | coding |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047595.1 |
NCBI id | CM018541.1 |
chromosome length | 35600603 |
location | 23592579 ~ 23634925 (-) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
symbol | description |
---|---|
pou2f2a | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane. Is expressed in forebrain; immature eye; and midbrain. Orthologous to human POU2F2 (POU class 2 homeobox 2). |
pou2f2 | Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in cellular response to virus; positive regulation of interleukin-6 production; and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within cell maturation; mature B cell differentiation; and positive regulation of transcription, DNA-templated. Located in nucleoplasm. |
description |
---|
PREDICTED: POU domain, class 2, transcription factor 2 isoform X8 |
id | name | namespace |
---|---|---|
GO:0006355 | regulation of transcription, DNA-templated | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0043565 | sequence-specific DNA binding | molecular_function |
GO:0003700 | DNA-binding transcription factor activity | molecular_function |
id | description |
---|---|
K09364 | POU2F, OTF; POU domain transcription factor, class 2 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_026940159.2 | True | 4538 | mRNA | 0.48 | 17 | 23592579 | 23634924 |
XM_026940160.2 | False | 4475 | mRNA | 0.48 | 16 | 23592579 | 23634924 |
XM_026940161.2 | False | 1701 | mRNA | 0.53 | 15 | 23593863 | 23609961 |
XM_034306997.1 | False | 3314 | mRNA | 0.49 | 17 | 23592579 | 23609961 |
XM_034307000.1 | False | 4283 | mRNA | 0.47 | 16 | 23592579 | 23634924 |
XM_034307004.1 | False | 3059 | mRNA | 0.48 | 16 | 23592579 | 23609961 |
XM_034307012.1 | False | 3181 | mRNA | 0.51 | 16 | 23593863 | 23634925 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
erfl3 | erf | coding | downstream | 13288 | 23537819 ~ 23579291 (-) |
gsk3ab | gsk3a,LOC103362704 | coding | downstream | 124667 | 23449585 ~ 23467912 (-) |
znf574 | LOC108266406 | coding | downstream | 147644 | 23427178 ~ 23444935 (-) |
grik5 | grik5,LOC107717427,LOC107551699,LOC107700189,LOC107671209 | coding | downstream | 173841 | 23348325 ~ 23418738 (-) |
LOC117597378 | LOC108266467,LOC108266480 | coding | downstream | 246396 | 23340433 ~ 23346183 (-) |
atp1a3b | atp1a3b,LOC108432319,LOC108266346,LOC107671176,LOC107723432,LOC107582039,LOC107551687 | coding | upstream | 45367 | 23680292 ~ 23702357 (-) |
si:ch73-22o12.1 | LOC108266341,LOC108261109 | coding | upstream | 96677 | 23731602 ~ 23795116 (-) |
vars1 | vars,LOC107700174,LOC107723495,LOC107717441 | coding | upstream | 192513 | 23827438 ~ 23847366 (-) |
LOC113542255 | LOC108266323 | coding | upstream | 215838 | 23850763 ~ 23853697 (-) |
ino80e | ino80e,LOC107723407,LOC107700176,LOC107551684,LOC107717446 | coding | upstream | 221158 | 23856083 ~ 23862923 (-) |
G13369 | NA | non-coding | downstream | 64639 | 23527690 ~ 23527940 (-) |
G13361 | NA | non-coding | downstream | 86281 | 23506020 ~ 23506298 (-) |
G12917 | NA | non-coding | downstream | 461081 | 23131275 ~ 23131498 (-) |
G12819 | NA | non-coding | downstream | 653783 | 22938226 ~ 22938796 (-) |
G12816 | NA | non-coding | downstream | 664015 | 22919285 ~ 22928564 (-) |
G13424 | NA | non-coding | upstream | 179352 | 23814277 ~ 23816058 (-) |
G13438 | NA | non-coding | upstream | 276154 | 23911079 ~ 23912280 (-) |
G13452 | NA | non-coding | upstream | 386605 | 24021530 ~ 24021918 (-) |
G13465 | LOC108266188 | non-coding | upstream | 407329 | 24042254 ~ 24042606 (-) |
G13467 | NA | non-coding | upstream | 408519 | 24043444 ~ 24043657 (-) |
cicb | cic,LOC107582035 | other | downstream | 65256 | 23477158 ~ 23527323 (-) |
cxcr3.2 | LOC108266514 | other | downstream | 426995 | 23132926 ~ 23165584 (-) |
LOC113542417 | NA | other | downstream | 463266 | 23120472 ~ 23129313 (-) |
zgc:92606 | zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 | other | downstream | 684439 | 22901351 ~ 22908140 (-) |
aicda | aicda | other | downstream | 900775 | 22686407 ~ 22691804 (-) |
dedd1 | dedd2 | other | upstream | 24598 | 23659523 ~ 23674479 (-) |
LOC113542286 | riiad1 | other | upstream | 507674 | 24142599 ~ 24149267 (-) |
LOC117596842 | NA | other | upstream | 601367 | 24236292 ~ 24240079 (-) |
si:dkey-92i15.4 | LOC108265956,LOC108429986 | other | upstream | 756605 | 24391530 ~ 24404530 (-) |
si:ch211-105c13.3 | LOC108265907 | other | upstream | 900935 | 24535860 ~ 24546841 (-) |