grwd1 (grwd1,LOC107692548,LOC107750005,LOC107549456,LOC107737912)



Basic Information


Item Value
gene id grwd1
gene name grwd1,LOC107692548,LOC107750005,LOC107549456,LOC107737912
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 22155538 ~ 22161293 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026940228.2
GGAAGTGCGCCCTGGGCTGCTTCTTTGAGTTCTCAAAATGGCTGCGCCCGATGAAAACACGCTTCTTCGTGAAGATGAAGAAGTTGAAGAGATGGAAGCGGGTGATAGTGATGAAGATGAGATGGAGGAGGAAGGACATGGGGAAGAAGGCGGGGAGAGTAAAGTGTATGTGCCTGGCGTTCAGCCGCTTCAGCCGGGAGAAGAGCTAGAGATGGACCGCTCGGCTTACCGCATGTATCACGAGTGCCAGACAGGTGCCCCTTGTCTGAGTTTTGATGTATTACGTGATGCTGAAGGAGAAGGAAGAGAGACGTTTCCCTTGTCCATGCTGCTGTGTGCAGGTACCCAAGCAGATACAGCTCTCAGTAACAGACTCATTGTGATGCGCATGCACAACCTGTATGGCACTGAAAAagagaatgaggaggaggaggaggagagcagtGATGAgagtgatgaagatgaggatgatgaggagaaGAAGCCACAGATGGAGTTGGCCATGGTGACCCATTATGGAGGAATAAATAGAGTCAGAGTGACCCAGATTGGTGAGCAGTCATTGGCTGCTGTCTGGTGTGAGAAAGGTCAGGTGGAAATTTTTGATCTTCGGCCACAGCTGGAAGCAGTTCACAGCTCTACTGCCATGACAGCGTTCGTTAAACAGCATAAGGAGGCCACACCTTTGTTCAGTTTCTCAGGTCACATGACAGAAGGCTTTGCCATCGACTGGTCTCCTAAAGTACCAGGCCGGCTTGTGAGTGGAGACTGCAAGAAGAACATTCACGTGTGGGAGCCTCGAGAGGGTGGAACTTCCTGGCAGATTGACCAGCGGCCTTTTAGCTCTCATACCAAGTCTGTGGAGGACCTCCAGTGGTCACCTACTGAAGCAACAGTTTTTGCCTCCTGCTCAGTGGATCAGTCCATTCGCATTTGGGATATCAGAGCTCCTCCAAAATCAATGCTCTCAGCCAATGAAGCTCACTCATCAGACGTCAACGTCATCAGCTGGAATCGGACTGAACCATTCCTGTTATCTGGAGGGGATGATGGGCTTCTGAAAGTGTGGGACTTGAGGCAGTTCCAGTCTGGGCATCCAGTGGCCAGCTTCAAGCAACACACTGCTCCTATCACATCAGTGGAATGGAGTCCCGTCGACTCCAGCGTGTTTGCCGCCTCTGGGGCAGACGATGTCATCAGCCAGTGGGATCTGTCGGTGGAGTCATGTGACATGGGAGAGCAGGCTGACAGCTTAAAGAAGCTCCCGCCACAGCTGCTGTTCTTGCATCAGGGCCAGACAGAGGTCAAGGAGCTCCACTGGCACCCACAGATCCACGGAACTCTCATCTCCACTGCGCTGTCAGGATTCAATGTGTTCAGGACTATTTCAGTGTAAAAGGGAAAGAAGTGTATGTGTGCTTTTGTGCCTTATGACAATAGTAGAAATATGTTAAATACCATCATCATGGCAGTGATCAAGGTTTTCTTTTTGACTGATCACTACACTTGTTTCTAGATCCTCtggaatttgtttaaaatataggCAACACAGAAAATGGCGCACTCAGCTGGTACTCTAGGTGACAGGCAGCCAGTGcaaacacagctgtgtgtcCTAGTTTTGAAGTTCAGTGCTACACTGCTCATCAACATGTTGAAAAATGTCTTTATCCTTTTATTATTCCATGAGTGAATGCTATTATCTCAAGTcatattttgtattaatgtttCTGGAGTCTTCTATGTGTACTTAGAATCAGTTCCTTATTGGTGCAAGTTCGAATGCAGACGCTGATGCTGCTACAGCCACCCGTGGcagggagtccaagagagcgaAATTACCCATTACTCTCTCCTGTCAGTCTGAGAGACAGTAGCCAATTGTAGACTTCTGTATGTAACTCATGTATGTAAAAGAGGGTATTTAGCGCTTTCCTTCAAGTGTGTTTACCCTCTAATGTAGCATGagtagcagtttgaaaagatgtggtggctggcttcatgtctCTCTAAGGACACCATGCTAGCCCTGACCCTCCTCGGCTGGTAGTGACTGTATTATAGGGGAGAGCTAGCTAGCAGATGGAaattggcagatgaccaaatttggagaaaatggtataaaataaaataaaataaaaaaaaaagaattattttacatattttggtTGTAACAGATGCTGTTTAAGATGAGCGAGACAGTGCAACAAGCAGCCCTCATCTGTCACTGCTTGATTCAGAAGCTCATACTCATGTATGAAACTCTTAAAGACATTACTTTTATCCTTAACTCTGAAATTGTGTTAAGAACAACTGAAATTAAATGTCTTTTCTGTCATAATATTCTTGCAAGGCCTCATCTTCATGGACACAAATAAATGACCTTGACTGCTACAAAA

Function


symbol description
grwd1 Predicted to be located in nucleus. Is expressed in several structures, including alar plate midbrain region; digestive system; midbrain; pectoral fin bud; and segmental plate. Orthologous to human GRWD1 (glutamate rich WD repeat containing 1).

NR:

description
PREDICTED: glutamate-rich WD repeat-containing protein 1

GO: NA

KEGG:

id description
K14848 RRB1, GRWD1; ribosome assembly protein RRB1

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026940228.2 True 2399 mRNA 0.46 7 22155538 22161293

Neighbor


gene id symbol gene type direction distance location
atg12 atg12,LOC107692547 coding downstream 12091 22141003 ~ 22143447 (-)
si:ch211-149k23.9 LOC108266957 coding downstream 14664 22133432 ~ 22140874 (-)
LOC113542354 NA coding downstream 23318 22114417 ~ 22132220 (-)
fdps fdps,LOC107673012 coding downstream 44835 22103097 ~ 22110703 (-)
rusc1 rusc1 coding downstream 54444 22087349 ~ 22101094 (-)
zgc:174888 NA coding upstream 8634 22169927 ~ 22180493 (-)
flcn flcn,LOC107692552,LOC107750008,LOC107549459,LOC107673020,LOC107598420 coding upstream 20863 22182156 ~ 22193202 (-)
josd2 josd2 coding upstream 73043 22234336 ~ 22242635 (-)
pitpnc1b LOC108269029 coding upstream 198592 22359885 ~ 22370126 (-)
cacng6b LOC108266843,LOC108437488 coding upstream 420802 22582095 ~ 22589716 (-)
G12375 crabp2a,LOC108272314,LOC107598461,LOC107596745,LOC108437453,LOC107673000,LOC107685576 non-coding downstream 195239 21872276 ~ 21960299 (-)
LOC113542638 NA non-coding downstream 217753 21934683 ~ 21937785 (-)
G12377 NA non-coding downstream 225395 21927459 ~ 21930143 (-)
G12373 NA non-coding downstream 296698 21857615 ~ 21858840 (-)
G11974 NA non-coding downstream 620339 21493358 ~ 21535199 (-)
G12498 NA non-coding upstream 171832 22333125 ~ 22334604 (-)
G12639 NA non-coding upstream 528683 22689976 ~ 22690185 (-)
G12641 NA non-coding upstream 529678 22690971 ~ 22691193 (-)
G12642 NA non-coding upstream 529995 22691288 ~ 22691526 (-)
G12656 NA non-coding upstream 588320 22749613 ~ 22753941 (-)
rxrbb rxrbb,LOC108267229,LOC108413045,LOC107596638,LOC107581542 other downstream 880197 21263577 ~ 21275341 (-)
G10832 LOC108267614 other downstream 2331855 19816477 ~ 19823683 (-)
trnaq-cug_9 NA other downstream 2408655 19746526 ~ 19746883 (-)
trnaq-uug NA other downstream 2409598 19745650 ~ 19745940 (-)
LOC117597712 NA other downstream 2452378 19702611 ~ 19703160 (-)
aicda aicda other upstream 525114 22686407 ~ 22691804 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other upstream 740058 22901351 ~ 22908140 (-)
LOC113542417 NA other upstream 959179 23120472 ~ 23129313 (-)
cxcr3.2 LOC108266514 other upstream 971633 23132926 ~ 23165584 (-)
cicb cic,LOC107582035 other upstream 1315865 23477158 ~ 23527323 (-)

Expression



Co-expression Network