gnb3a (gnb3a,gnb3,LOC108266619,LOC108432288,LOC103042898,LOC106605091,LOC106521057)


Basic Information

Item Value
gene id gnb3a
gene name gnb3a,gnb3,LOC108266619,LOC108432288,LOC103042898,LOC106605091,LOC106521057
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 23005511 ~ 23010223 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940258.2
CTCACCTGatctcacttcctgttcatcTCCGTTGGTGGCTGCGCCTGACAACTGTTGCCATGGGTGAAATGGCGCAACTTCGGAAGGAGGTGGAGAACCTCAAGAACCAGATCTCTGCAGCACGTAAATCAGTGCAGGACACCACGCTGCAGGATAGCGTCTCAGGCACAGCAGCAGTGGGAAAGGTTCAGCTCAAATCCAGAAAGACACTGAGAGGACATCTGGCCAAGATCTACGCCATGCAATGGGCCACAGATtcaaaACTCTGTGTGAGCGCATCTCAGGATGGCAAACTGATTGTGTGGGACACCTACAGCACCAACAAGGTGAATGCCATCCCGCTGAAGTCTTCATGGGTGATGACGTGTGCGTACGCCCCCTCAGGAAACCTGGTGGCATGTGGTGGCTTGGATAACATGTGCTCTATCTACAATCTAATGCCAAAAGACGGTCATATTAAGGTCATGCGTGAGCTGGCTGCACATACAGGCTATTTGTCTTGCTGTCGCTTCCTGAGTGACACCGAGATCATCACATGTTCTGGAGACTGTACCTGcTGTCTCTGGGACATCGAGACTGGGGAACAGAAGACGATTTTTTCTGGCCACATTGGTGACTGCATGTCACTGGCTCTGTCTCcagattttaaatgttttatttcaggaTCATGCGACTACACAGCCAAACTGTGGGACGTACGAGATGGCCAGTGCAAACAGACATTCTATGGCCATGAGAGTGACATAAATGCTATTGGGTTCTTCCCCAATGGTAATGCAGTGATCACTGGCTCAGACGACTCATCCTGCAGGCTGTATGATCTCCGCGGTGATCAGGAACTGACCACTTACCAGGACTCGAGCCTCATGAGCGGAGTCACCTCCCTCGCACCCTCACTTTCTGGACGCCTCCTCCTGGTTGGCTACGACGACTTTACCTGCAACATCTGGGACATGCTGAAGGCTGAGAGAGTGGGAACACTGTCAGGCCACGATAACCGAGTGAGCTGCCTCGGGGTGACGGCGGACGGAATGGCCTGCTGCACAGGATCCTGGGATAGCTTCCTGAAGATCTGGAACTGAAACACCTTCTGAACGAACATctaaagaagagaagaaaaacatgatTCAGGGAAACACCCGAGTGGGTTTAAAATTGGGTATgtgggcagagagagagagagagagagagagagagtgtttgcGTTTGAGACAATTATCTCATATAtaggcacatttttttttcttaaagaaattATGCAATAAACTACACAAATGACAAGAGATATATAGGATTGTTCAAATCTTACTGAGTAACTGCAGGAAGCACTTTTCAGGTAATTTTGAAAGAAAACCAGTTAGAGGAACGTAGGTAAAGTAGTGTTGGTTACTCTTAAATACTATTACTAGTGCATAGTACTTTAAGAATGAACTGAAACATACCCACCAGAACAGAACGAGTGATACGGTTCAGGTGTAAATAATGCAAACTGCTGCAGGAGCTGCCAAAATACATTTGGcatgcatatttttaaaaccaaGCTATAACTCTATTGCTTTATAGATTCATAATGATCTATAAGTTTGGAAAATATTGTTCAATATTAGATTTTAGATATCTGTGTTTACATTATTTGAGGTATGTAATATTGGCTACATTTGATTAATTTGGCATTATTcttatataacttatatattGCCTATTATATACATAACACTTTGTAGCATTATTTCACTATCCTTGGTTTTTCCACTA

Function

symbol description
gnb3a Predicted to enable signaling receptor complex adaptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be part of heterotrimeric G-protein complex. Predicted to be active in cytoplasm. Is expressed in nervous system. Human ortholog(s) of this gene implicated in artery disease (multiple); congenital stationary night blindness 1H; familial hyperlipidemia; mental depression; and type 2 diabetes mellitus. Orthologous to human GNB3 (G protein subunit beta 3).
gnb3 Enables GTPase binding activity. Involved in several processes, including cell volume homeostasis; regulation of fat cell differentiation; and regulation of lipid metabolic process. Located in extracellular exosome. Implicated in artery disease (multiple); congenital stationary night blindness 1H; familial hyperlipidemia; mental depression; and type 2 diabetes mellitus.

NR:

description
PREDICTED: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3-like isoform X1

GO: NA

KEGG:

id description
K04536 GNB1; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940258.2 True 1755 mRNA 0.45 8 23005511 23010223

Neighbor

gene id symbol gene type direction distance location
tpi1b tpi1,tpi1b,LOC107700200 coding downstream 74166 22925553 ~ 22931345 (-)
LOC113542547 NA coding downstream 112884 22887194 ~ 22892627 (-)
LOC113542545 NA coding downstream 119892 22875687 ~ 22885619 (-)
LOC113542546 NA coding downstream 133396 22860265 ~ 22872115 (-)
rasip1 rasip1,LOC107549479,LOC107724795,LOC107744292 coding downstream 259446 22731675 ~ 22746065 (-)
p3h3 p3h3 coding upstream 4632 23014855 ~ 23025868 (-)
LOC113542387 LOC108266442 coding upstream 140496 23150719 ~ 23157164 (-)
LOC113542343 LOC108266461 coding upstream 160177 23170400 ~ 23178284 (-)
LOC113542345 LOC108266531 coding upstream 175808 23186031 ~ 23190084 (-)
LOC113542344 NA coding upstream 182279 23192502 ~ 23220929 (-)
G12819 NA non-coding downstream 66715 22938226 ~ 22938796 (-)
G12816 NA non-coding downstream 76947 22919285 ~ 22928564 (-)
G12808 NA non-coding downstream 136100 22869159 ~ 22869411 (-)
G12805 NA non-coding downstream 141493 22863485 ~ 22864018 (-)
G12797 NA non-coding downstream 175640 22825000 ~ 22829871 (-)
G12917 NA non-coding upstream 121052 23131275 ~ 23131498 (-)
G13361 NA non-coding upstream 495797 23506020 ~ 23506298 (-)
G13369 NA non-coding upstream 517467 23527690 ~ 23527940 (-)
G13424 NA non-coding upstream 804054 23814277 ~ 23816058 (-)
G13438 NA non-coding upstream 900856 23911079 ~ 23912280 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other downstream 97371 22901351 ~ 22908140 (-)
aicda aicda other downstream 313707 22686407 ~ 22691804 (-)
rxrbb rxrbb,LOC108267229,LOC108413045,LOC107596638,LOC107581542 other downstream 1730170 21263577 ~ 21275341 (-)
G10832 LOC108267614 other downstream 3181828 19816477 ~ 19823683 (-)
trnaq-cug_9 NA other downstream 3258628 19746526 ~ 19746883 (-)
LOC113542417 NA other upstream 110249 23120472 ~ 23129313 (-)
cxcr3.2 LOC108266514 other upstream 122703 23132926 ~ 23165584 (-)
cicb cic,LOC107582035 other upstream 466935 23477158 ~ 23527323 (-)
dedd1 dedd2 other upstream 649300 23659523 ~ 23674479 (-)
LOC113542286 riiad1 other upstream 1132376 24142599 ~ 24149267 (-)

Expression


Co-expression Network