lenep


Basic Information

Item Value
gene id lenep
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 24582501 ~ 24583824 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940260.2
ATGCATCCTCAGCGCCCCCTGGCGCAGGCTGTGCCTCCCACACTGGGCCAGAATCTGAGAGACCTGGCATATGGCTTTGGCCGTGGTAAGAACTTGCTGGGAAGGAACATCGCCTACGGGGTTATCCAATCTCTGAAAGAGTGTCTTTACTTCCTGCTCTGCTGCTGGTGCATAAAAGAGATCCTGGACTGAAACAAAGGAAAGAGAATCCAAGGTGATATGAAAAATGTCCCTGATTGAAGTGGCATGTTCCCAGCACTGTTCAGCAGACCCATCAAGGATAACTGACTTGTCATAGCTGTGACAAAAGAGGCCTTTGACCATGACATAAAGAGAAACCACTGTATGTTATGTGTACAACTCCAAATGCAATAAAGTTTGGGTTTGTGCTAAAGAAACAATGGGAATTATCTAGCAAACAACAGGAAACCCTGAGATGTGCCCAGtttggtcatctgccaattcccacccacctaATAGCGCTATCAGTATCAtctgacagctaccaaccagggatggtgaaggctaacatgctccatctgagacatgtgaaaccAGCCAAATGCATCATTTCAATCTCCTGCTCATGTTGTATCATAGGGCAACGTatcacactcagaggaaagtacTATCTAACCTCTTCCACACACATGAGCTCACGGACGCTTGTGATTgtctagtgttgctgtgattgacagaagaGAGTAAGTCTCCCAACCAGAGAGCATAGCCACTTTCCCTTAGC
>XM_034307365.1
ATGCATCCTCAGCGCCCCCTGGCGCAGGCTGTGCCTCCCACACTGGGCCAGAATCTGAGAGACCTGGCATATGGCTTTGGCCGTGGTAAGAACTTGCTGGGAAGGAACATCGCCTACGGGGTTATCCAATCTCTGAAAGAGTGTCTTTACTTCCTGCTCTGCTGCTGGTGCATAAAAGAGATCCTGGACTGAAACAAAGGAAAGAGAATCCAAGTGTCCCTGATTGAAGTGGCATGTTCCCAGCACTGTTCAGCAGACCCATCAAGGATAACTGACTTGTCATAGCTGTGACAAAAGAGGCCTTTGACCATGACATAAAGAGAAACCACTGTATGTTATGTGTACAACTCCAAATGCAATAAAGTTTGGGTTTGTGCTAAAGAAACAATGGGAATTATCTAGCAAACAACAGGAAACCCTGAGATGTGCCCAGtttggtcatctgccaattcccacccacctaATAGCGCTATCAGTATCAtctgacagctaccaaccagggatggtgaaggctaacatgctccatctgagacatgtgaaaccAGCCAAATGCATCATTTCAATCTCCTGCTCATGTTGTATCATAGGGCAACGTatcacactcagaggaaagtacTATCTAACCTCTTCCACACACATGAGCTCACGGACGCTTGTGATTgtctagtgttgctgtgattgacagaagaGAGTAAGTCTCCCAACCAGAGAGCATAGCCACTTTCCCTTAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940260.2 True 745 mRNA 0.47 2 24582501 24583824
XM_034307365.1 False 732 mRNA 0.47 2 24582501 24583824

Neighbor

gene id symbol gene type direction distance location
LOC113542308 NA coding downstream 32013 24547264 ~ 24550488 (-)
s100t LOC108265897,LOC107594934,LOC107714712,LOC107673706,LOC108441953 coding downstream 48006 24532771 ~ 24534495 (-)
LOC113542274 cgn coding downstream 107293 24442387 ~ 24475208 (-)
tuft1a LOC108265940 coding downstream 149535 24419481 ~ 24432966 (-)
aqp10a LOC108265981,LOC108429989 coding downstream 197278 24375921 ~ 24385223 (-)
shc1 shc1,LOC107714692,LOC107723450,LOC107677023 coding upstream 1129 24584953 ~ 24622217 (-)
si:dkey-246i14.3 LOC108269281 coding upstream 186452 24770276 ~ 24807929 (-)
trim46a trim46,trim46a,LOC108429934,LOC107723477,LOC107714687,LOC107582073 coding upstream 451581 25035405 ~ 25052980 (-)
osgin2 osgin2 coding upstream 734462 25318286 ~ 25333708 (-)
LOC113545493 NA coding upstream 751777 25335601 ~ 25336609 (-)
G13783 NA non-coding downstream 191097 24390511 ~ 24391404 (-)
G13782 NA non-coding downstream 194498 24387289 ~ 24388003 (-)
G13748 NA non-coding downstream 264081 24317682 ~ 24318420 (-)
G13752 NA non-coding downstream 312697 24266654 ~ 24269804 (-)
G13725 NA non-coding downstream 354732 24224266 ~ 24227769 (-)
G13819 NA non-coding upstream 30429 24614253 ~ 24619949 (-)
G13834 NA non-coding upstream 130165 24713989 ~ 24718852 (-)
G14303 NA non-coding upstream 479644 25063468 ~ 25065486 (-)
G14315 NA non-coding upstream 515578 25099402 ~ 25101229 (-)
G14333 NA non-coding upstream 562017 25145841 ~ 25148263 (-)
pbxip1b pbxip1 other downstream 4254 24561500 ~ 24578247 (-)
LOC113542209 LOC108265814 other downstream 21126 24552298 ~ 24561375 (-)
si:ch211-105c13.3 LOC108265907 other downstream 35660 24535860 ~ 24546841 (-)
si:dkey-92i15.4 LOC108265956,LOC108429986 other downstream 177971 24391530 ~ 24404530 (-)
LOC117596842 NA other downstream 342422 24236292 ~ 24240079 (-)
rps27.2 rps27,LOC107699547,LOC108429942,LOC107582081,LOC106605923,LOC107379597,LOC100304576,LOC100705775 other upstream 678216 25262040 ~ 25266771 (-)
bcam bcam other upstream 811663 25395487 ~ 25487425 (-)
G14258 NA other upstream 816932 25400756 ~ 25404306 (-)
cadm4 cadm4,LOC107714698,LOC107657657,LOC107699529 other upstream 963210 25547034 ~ 25705515 (-)
fxyd7 LOC108429921,LOC103043934 other upstream 1174231 25758055 ~ 25764694 (-)

Expression


Co-expression Network