colq (colq)


Basic Information

Item Value
gene id colq
gene name colq
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 20698032 ~ 20713758 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940280.2
CCCAAAGGCTTGTGGATAGTGAAGAAGGcagggacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagacagagagagcgagagatagaGGGGGGTGTAGTGGTGTGAAGCCTCAGTTCAGTAGCCGGAGCCATTGGAGGTACAGAGCTCTCTGCAGTCAAGCAGCATGTTTCTTTTCACTCTCGGACTGTATTTACCTCTCCTCTTTCACTATGCTTCATCACACTCCTTCATGGACAGCATTTACTCCTTTCCAGCAGAGCTGGAAGCACTGGAACCCAGGAAGAAATTTAACCCGTGCTGTTTACTGACTCCACCTCCACCCCCGTTGTTCCCCCCACCCCCGTCGCTGTGGCACAAGCCTCGGAGAGACCATGGCAACGTATGGAGAAATGAGAATACAGAGGGAGAGGATAAGAAGTCAACAGGCTCTACCTGCCGGGTGGGAGCACCCGGACCAGCCGGGCCAGCAGGACCTCAGGGTCCTCCTGGATTACCAGGCCCAAAGGGACCAAAAGGAgaaaagGGAGAAATTGGGAGACCCGGACAAAAGGGGCGCACTGGATCCCCAGGCTTGCCAGGGCGACAGGGACCAAATGGATGGCCAGGTCTGAGTGGGCCCAAGGGGGAGAAAGGTGACTCTGGACTGATGGGCTTGCCTGGAGCACGAGGACCAATAGGACCCAAGGGATTGCCTGGATACAAAGGAGAAAAGGGCTCACGGGGTGACCGAGGTGAAGCTGGCCAAAAGGGTCAGAAGGGCACAATGGGTCTGCCGGGAAtgcttggtcagaagGGTGAAATGGGCCCAAAAGGAGAGTCTGGCATCCCAGGAAGCAGAGGACCCACTGGGCAACCAGGAAAAAGAGGCAAACAGGGTCCAAAGGGAGACACTGGTCTCACAGGACCAATGGGACCAGCAGGCCCTCAAGGACCCCCTGGTCATCCAGGTCCTCCTGGTCTGCCTGCTTCAGGGCTGTACGTGGTGGGGCCAAAAGGGGAGAAAGGGCAGCCAGGCAACCCAGGCCATTGTGGTTGTAACTCTCTTGTGAATATGAACAACCCTTCTAGCTCATTTGACCAGCAATCCAGGAGCAGCTATCCCAGAGTGCCAGCGATTTTTGTGGTGAATAATGAACAAGAACTGGACCGTCTCCACACTGATAATGCACTGGCTTTCCGTAAAGATCAGAGGACTCTATATTTCAAGGACACTGATGGATGGTTGCCAATTCAGCTAACGCCATTTCAGTCAACTGAGCATGCTCCAGATCAGGATGGTTTCTGCGGGGATGGCATTGTGCAGGTGGAGAATGGAGAGGAGTGTGATGATGGAAACAAGGTGGTCACAGACGGCTGTGTCAagTGCAGACATGCATACTGCGGTGATGGCTATCGGTACGATGGAGCTGAGGAGTGTGATGGAAAAGACTTTGGATATCAAACCTGCAACTCTTATCTGCCTGGATCTTATGGACATCTTAAATGCACTGTTGACTGTTTCATTGACTCCACAAGCTGCAAGTATTTTACATGAGAAGACAAGAAAACACATGGAGCCCCACACTGTCTTGTGAAAGTAGCAGGGAACAAGACTGAAGGCACtgcaaacaaacagacaatTAAAATACCTTTGATTTGGGGGCAGGGGGATACAAACATGCATATTATACTAGTTTGTTGCAATGCTGCCAAGAAGAAGCCACATAGTTCACTGGAAAAAGAGCACTCTGCTCAGTCATGGCAACCACACAGGACCCATTGCTCTCTGTCTTAAGGACTCAACCAGGATGCTGTTCTCTTTTCTGTTCAGCCTTCTCTCTGCGGTGCTGGACACCTGCCTGACATTCTGCTTAGATGGTTTGCCATGAATTTGCTGTCTTGAAAAGGCAAGCCTAGACTAGACTTAATACCTCAATGTACAACTTTTCCACAAGTAGGCCATTTTCTAGTGGCCCACCCCTCCATCTCTTTCCCAGGGTGCTGTTGTATTTGGACTGCAATGTGAACCAATTAGCATTTTGCATGAGGGCTTGGTTGGTTGAAGTATGGTGTAATAAGCTATCATGGCATTTATCTAAGGCcaaaaaacccacttgactcaCTAAAGCTATGTACATAGACTGTATGGCCTTGACCAAATGAGGAAACAAGGCTTCACGTGGGAGTGCCTCACCTCAATAGAGGATTGGGTAAAACCAGCTGCCTGTGTTTTAGAGCTTAGTCCATGATGCTAATGCTGAGTGGATCTCTTCCACGGTGCTAAGCCAAGCACAGGGCTGTAAAAAAAGGTCAGAGAAGCACTGTCCCAAAAAACAATAGAAGGAATTAGATAGAGCTCATAATGTTCCTTATGTGGAGGTGTTCTAACTACAGCCTTGTTTAGGTCAGGGTTAGGTTTTAGCTAGACACCGTCATTCTTACCTCAGGAACTCTCTGAGTCATCTCATCATTAGAGCTGGTCCACCATCCCCAGGTGGAGCAAGGCTTACATATTCCAGTATTCTTAAGCTGCATCTAACTGCTAATGTCACTTGTCTATTATGTGTATTGCTGTAAATGCTTCAAGAtttgatgaagaaaaaaattctgatcCTTTGGGATCTTGACTCTATGCTTATTTAAGGTGGTAACTGAATCACATATTATGGCTGTCAAACTGTTAGAAAAGATTTCTATACTGTCAGTTAGCTTTGGCAGGGGAAGTCTATCGCTGCTATCTAGTAGGCTAAAGACTGTTGGAGTTAACCTGAATTAACAGTTACTGACCATTTTTGTCATAATTCTTAGACTGCATATGTAGCATGAACTTTCTGGTCAAAAGATGCAACgcatcatatcatatatcactGTTCTTGtattgtgacatttttttatacagtcTATTGAAaactactgtatgtgtttttcaTACGCTAACAGCATCATTTGAGACTTCTCCATACTTAGTGATTTCTGGAAGTGATATACTATTTATGTCTACAGATCTAATGTATATGAGATAAAGTGTCTTGAACTTGCATCAGCATGTTATTACTACTGTATATGCTCACCATGAAGGTAAAGATCGCTATATTACAGCTGATTATGCTATGTTATTTCCAGTaatagtttgtgtttttattatgtcTGATGTTTTTTGCCAAGGTATGACTGTTAGTGAAATGCATTGGGTATCTCATGGACTGTTATCTTCTCTTTTCAATGATTCAAGCAAGTATGTTAAGATGTATGTTATGATGTGTACTGCACTATATACAAAAGAAAATGGCTCAGTAAGCATTCACTGGTGCTGTTGCATGTTGAGATAATGCAGCAATGAATATTCTGTGCTACTGTAATGTGGATTATTATGAAATTCATGTTTGATACAGccattaaaataaagtttataaagctA

Function

symbol description
colq Predicted to enable heparin binding activity. Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to be active in extracellular matrix and extracellular space. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 5. Orthologous to human COLQ (collagen like tail subunit of asymmetric acetylcholinesterase).

NR:

description
PREDICTED: acetylcholinesterase collagenic tail peptide-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940280.2 True 3412 mRNA 0.46 17 20698032 20713758

Neighbor

gene id symbol gene type direction distance location
fkbp14 fkbp14,LOC107550815,LOC107596753,LOC107685615,LOC107745381,LOC107743226 coding downstream 16898 20678790 ~ 20681134 (-)
cpvl cpvl,LOC107684544,LOC107745375,LOC107550833,LOC107743225,LOC107685540 coding downstream 70873 20619546 ~ 20627159 (-)
jazf1b jazf1,LOC108441515,LOC107684540,LOC107550831 coding downstream 149146 20531805 ~ 20548886 (-)
hibadhb hibadh,hibadhb,LOC108441516,LOC107685537,LOC107550829,LOC107744697,LOC107743154 coding downstream 192270 20496283 ~ 20505762 (-)
hoxa13b hoxa13,hoxa13b,LOC107685614,LOC107743224,LOC107596755,LOC107744698 coding downstream 211738 20482984 ~ 20486294 (-)
hacl1 hacl1,LOC107745383,LOC107684560,LOC107743162,LOC107685543 coding upstream 704 20714462 ~ 20727216 (-)
LOC117598413 LOC108267376 coding upstream 13694 20727452 ~ 20729059 (-)
ankrd28b ankrd28,ankrd44,ankrd28b,LOC107685545,LOC107596646,LOC107745379,LOC107550837,LOC107684548 coding upstream 19668 20733426 ~ 20751548 (-)
twist1b twist1,LOC108256329,LOC103366955,LOC100712142,LOC107378688,LOC107103781 coding upstream 154613 20868371 ~ 20870748 (-)
LOC113542419 LOC103028094,LOC108440250,LOC108440212,LOC108440210 coding upstream 171309 20885067 ~ 20885871 (-)
G11523 NA non-coding downstream 21186 20674251 ~ 20676846 (-)
G11349 NA non-coding downstream 174810 20522679 ~ 20523222 (-)
G11277 NA non-coding downstream 246707 20450329 ~ 20451325 (-)
G11243 NA non-coding downstream 284834 20412167 ~ 20413198 (-)
G11119 NA non-coding downstream 596197 20041655 ~ 20101835 (-)
G11545 NA non-coding upstream 82992 20796750 ~ 20799412 (-)
G11569 NA non-coding upstream 131507 20845265 ~ 20845481 (-)
LOC113542610 NA non-coding upstream 152047 20865805 ~ 20866886 (-)
LOC117597063 NA non-coding upstream 157037 20870795 ~ 20879814 (-)
G11806 fhod3,LOC107743170,LOC107662660 non-coding upstream 524277 21238035 ~ 21239276 (-)
G10832 LOC108267614 other downstream 874349 19816477 ~ 19823683 (-)
trnaq-cug_9 NA other downstream 951149 19746526 ~ 19746883 (-)
trnaq-uug NA other downstream 952092 19745650 ~ 19745940 (-)
LOC117597712 NA other downstream 994872 19702611 ~ 19703160 (-)
trnaq-cug_8 NA other downstream 998395 19699566 ~ 19699637 (-)
rxrbb rxrbb,LOC108267229,LOC108413045,LOC107596638,LOC107581542 other upstream 549819 21263577 ~ 21275341 (-)
aicda aicda other upstream 1972649 22686407 ~ 22691804 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other upstream 2187593 22901351 ~ 22908140 (-)
LOC113542417 NA other upstream 2406714 23120472 ~ 23129313 (-)
cxcr3.2 LOC108266514 other upstream 2419168 23132926 ~ 23165584 (-)

Expression


Co-expression Network