ptchd3a (ptchd3)


Basic Information

Item Value
gene id ptchd3a
gene name ptchd3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 30338950 ~ 30344720 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944739.2
ATGCCACGCTGTCGGACTGACTGCATTGAGAAGCCTTTCTCCAGGCTCTTTGAGAAGCTTGGGCATGTGGTGGGTTCTTCTCTTGAGTGGTTCATAATCATTCCTCTGCTCATGTCCATAGGCTTTGGAGGAGGCCTGTTTTTTCTCGCCGAGCTCGAGGATAATGACATAGAGACCCAGTTCACACCTATCGATGGATTATCGAAGACAGCTAGGCTTTTTGTGATGGAGAATTTCCCAAATAATGACTCCATGTTCTCAAGCCAAAGACTCTACACCGAAGGGAAGTACGCTGTAATGATCCTGTCTACTGAAAATGGAGGCAACATTCTCACAAAGAGTCCATTCGAAGAAGTCATTCGCATTAACAAAAAAGTGACTAGTCTTTCAGTGAAGGTTGGACAGAGGCAGGTAGGCTTCAAGGATCTGTGCACCACCATGGATGGAAAGTGTGTCAGCAATGCCATAGTAGACATCTCTGAAAATAACGCAGACAAAATTGGACAGATAAATATAACCTTTCCAGTGCACACTTTCAGAAACAAACCCATCTTCCTTGGCTCTGAACTTGGTGGTGTGAAAACATCTGGAAACAGGATTCAGAATGCCCAAGCAATCAGACTTTTCTATTTCTTAAAAAACGTCCCCAGTTCTAATGAGTGGCTGAAAGAATTCCATCAAGTTCTTTATGCTGAAGCAAACAGCAAGAAAATCAAGATATCTCACTTTACCTCACTGTCCAGGCAGGAGGAGGTGCAGAAACACACTACTGATGGCCTCCCGTTTTTCTCCATCACCTATGTCCTTGCAATTGCGTTTTCCGTAATATCATGTATGCGATTGGATAACGTGAGGAACAGGCTGTGGGTGGCGTTTGTGGGCGTCATTTCTGCTGGACTGGCCGTCATCAGCAGTTTTGGCCTGTTGCTGTACGCTGGAGTGCCGTTCGTCATAACCGTGGCTAACTCACCTTTCTTAATTCTGGGCATTGGTGTTGACGATATGTTCATCATGCTGGCCAAATGGCAGCAGACCAACGTCAGAGACAGTGTTGAGAAGCGAATGGCAGACACTTATAAAGAAGCCGCCATGTCCATCACCATCACGACGCTCACCAATGTGCTGGGCTTCTACATCGGCCTCATGAGTGACTTCGCATCCGTCCAGATCTTCTGCCTCTACACCAGCACAGCCATTATATTCTGTTTCCTGTACAACATCACCTTCTTTGGAGGCTTTCTGGCCCTCAATGGGAGGCGAGAAGCTGGGAACCGACACTGGCTGACCTGCCTGAGAATCCCATTTGAGAGTCCGGTGGGTAAATCCAAGGCGTACGCCCTCTGCTGCACAGGAGGAGACTATGACCGGCAGACTGGCACAGAGAAAGAGCAGCCAGTTAATCATTTCTTCAAAAAGTACTATGGCCCCATTCTTACCAAGACACCAACCAAGGTGTGTGTGATATTCCTGTATCTTGGGTATCTCGCTGCTGGGATTTACGGGTGCTTCCTTTTGGAACAGGGGATCGAAATGAAACATCTAGCAGCAGATGACTCCTACGTAATCACGTTTTATGATGAAGAGAAGAAGTACTTTTCTAGTTATGGCCCAAACATCATGGTGGTAGTGACTGAGGAGTTTCCGTACTGGGATAAGTGCAGAAGATCTGAGCTAGACCGCTGCATGGAAGACTTCAACAAGCTCCATTTTGTCAACAAGGATCTGTATACCTCTTGGCTTGACTATTATGTTACATTTACTCAAAACACAGGACAAGACGTAAACAATGAGACCGTTTTTAAAACCAATCTGCCAAACTTCTTCAACCTCCTACCTGAGTTTGAGCAAGATGTGAACATCGTGAACGGTACAATCATTGCCTCTCGTTTTTTTGTGCAGACTATAAACATCGTCAACGCTACTATGGAGATAACGATGTTTAATGAGCTTAGAGACACAGCTGAATACTGTAAAGCGGCAAAACTACTGGTGTTTCATCCCATGTTCATCTACTTAGACCAATACACCGTGATAGTGAGCAGCACTGTTCAGAACGTGGGTGTCACTGCAGCGGTCATGCTGGTCATCTCACTTATCTTGATCCCCAAtcctctgtgctctctctgggTCACGTTCTCCATCGGCTCGGTCATCACCGGAGTTGCTGGCTTCATGGCATTATGGAAAGTCAATCTAGACTCCATTTCCATGATCATTCTGGTCGTGTGTATTGGTTTCACTGTTGACTTTTCAGCCCATATTTCCTACTCCTTTGTCTCCAGCAAGAAAGAAACCGCCAACGAGCGGGCTATCGACGCCTTGTCTTGTTTGGGGTATCCTATACTGCAAGGCGCTTTGTCCACCATAATAGGAGTCTTGGTGTTAGCTGGCTCCAAGAACCACATCTTTCGAACATTCTTTAAAATCATGTTTCTTGTCATGGTGTTTGGTTTGCTGCACGGCATTGTGTTCATCCCGGTCTTCCTCACGTGGTTTTCCTGCAGCTCGAACAAGCGTCATGACAATCGTGAGACGTGCAATGAGGAATACTCGATACAGAGTATAAGGACAACACAGACTCAAATATATGCCACTCAAAATTCTAACCAATGGTCAGGAGGAATGCATGACCCTGACTGTCCatga

Function

symbol description
ptchd3 Predicted to be located in sperm midpiece. Predicted to be active in membrane.

NR:

description
patched domain-containing protein 3-like

GO: NA

KEGG:

id description
K24682 PTCHD; patched domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944739.2 True 2646 mRNA 0.46 4 30338950 30344720

Neighbor

gene id symbol gene type direction distance location
anxa13 anxa13,LOC108272932,LOC108431991,LOC107570049,LOC107675241,LOC107588022 coding downstream 130876 30193051 ~ 30208074 (-)
LOC117597070 NA coding downstream 148760 30189555 ~ 30190190 (-)
LOC117597071 myo3a coding downstream 175253 30115305 ~ 30163697 (-)
myo3a myo3a coding downstream 227648 30067523 ~ 30111302 (-)
gad2 gad2,LOC107687529,LOC107675215 coding downstream 278355 30026423 ~ 30060595 (-)
kmt2ca kmt2c coding upstream 55435 30400155 ~ 30561913 (-)
xrcc2 xrcc2 coding upstream 237297 30582017 ~ 30586690 (-)
trnah-gug NA coding upstream 288346 30633066 ~ 30633137 (-)
LOC117595698 NA coding upstream 441243 30785963 ~ 30789410 (-)
LOC113547558 LOC108268894,LOC108264971,LOC108273546,LOC108270747,LOC108257668,LOC108270753 coding upstream 625297 30970017 ~ 30982915 (-)
G16747 NA non-coding downstream 7337 30331397 ~ 30331613 (-)
G16721 NA non-coding downstream 89273 30249464 ~ 30249677 (-)
G16709 NA non-coding downstream 163586 30175024 ~ 30175364 (-)
G16629 NA non-coding downstream 189362 30149342 ~ 30149588 (-)
G16566 NA non-coding downstream 385665 29873607 ~ 29953285 (-)
LOC117597677 NA non-coding upstream 35124 30379844 ~ 30382575 (-)
G16897 NA non-coding upstream 292363 30637083 ~ 30637584 (-)
LOC117595754 NA non-coding upstream 293129 30637849 ~ 30640024 (-)
LOC117596846 NA non-coding upstream 418865 30763585 ~ 30764477 (-)
G17000 NA non-coding upstream 421469 30766189 ~ 30766709 (-)
gpr158a gpr158 other downstream 5730 30232323 ~ 30333220 (-)
pcolce2b pcolce2,LOC108272785,LOC107566300,LOC107675309,LOC107588030 other downstream 524136 29797753 ~ 29814814 (-)
dipk2ab cunh3orf58,dia1b,LOC108272730,LOC107687522,LOC107741829,LOC107739121,LOC107588034 other downstream 734712 29548166 ~ 29604238 (-)
sugct sugct,LOC107687505,LOC107713787 other downstream 2785444 27445558 ~ 27553506 (-)
f13a1a.1 LOC108263067 other downstream 3581707 26745018 ~ 26757243 (-)
G16900 NA other upstream 295978 30640698 ~ 30642974 (-)
telo2 telo2 other upstream 643403 30988123 ~ 31014649 (-)
G17199 telo2 other upstream 657689 31002409 ~ 31003309 (-)
rnpc3 rnpc3 other upstream 1240021 31584741 ~ 31611972 (-)
G17630 LOC108267341 other upstream 1655905 32000625 ~ 32052554 (-)

Expression


Co-expression Network