rmdn1 (rmdn1,LOC107729932,LOC107756855,LOC107668150)


Basic Information

Item Value
gene id rmdn1
gene name rmdn1,LOC107729932,LOC107756855,LOC107668150
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 27309016 ~ 27319449 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944823.2
TGTCTGCTATCACTACCGGAAGTGGACAGAGCAGTGAAGCGGGGAGTGTGTAGGGTTGTGTGCAGCAgtaggtgagtgagtgagtgtgtgtagtgagtgtgtgtagtgagtgagtgtgtgtagtgagtgtgtgtgcagtgtgcggGGTGAGGACATGGCCGCTGTGTCTCCGCTGCGGGCTTTAACGCGGGCACTGAGCGGAATAACGCGGCGCCGCTGCAGCGCTTTCCGGAGGAGCTCAGCTTCAGCTCGGAATACTGCGATACTCGTCACTTTACCTCCACTATCTTATCTGGGATATGAAACACTCCGGAGAGTGTATTGTGCAACTGCAGTGTTTGCACTTGACAAAGCTGAGGAAGTTATAGAACAAGCCGATTACTTGTACAGCTGTGGAGAAACCGAGAAACTTTACCAGCTCCTGCTGCAGTATAAGGACAGTGATGATGCAGAGTTCCTGTGGAGATTGGCTCGAGCCTCACGTGACCTCGCTTTGCTGCCCAACATCACTGCTGACCAGAAGAAAAAACTCAGCTATGAGGCATTCGACTACGCCAAAAAAGCACTGGAGAAAAACGAAAACTGCTTTGCTGCACACAAATGGTATGCTGTTTGCTTAAGTGATGTAGGAGACTATGAAGGGGTCAAAGTTAAAATTGGAAATTCCTTCATCATTAAGGAGCATTTGGAGAGGGCTATTGAGCTAAATCCAAAAGATGCCACTTCTATCCATATCCTGGGTTATTGGTGTTTTGCCTTTGCTGAATTGCCGTGGTACCAGCGTAAAGTCGCAGCGGTTCTATTTGCATCACCACCAACTGCTACTTATGAAGAGGCCTTGGTGTTTTTTCTGAGAGCTGAGGAAGTGGACCCAAACTTCTATAGCAAGAATCTTTTGATGCTTGGGAAGACATACATGATGCTCAAGGACCAGGAGAAAGCTCTTCTTTGGCTTAAAAAAGCACGAGACTATCCTGCCATTACAGATGAGGACAAACAGGTTCACAAAGAAGCGCTTGATCTGCTCAAGAAGCTAAACGGCTGATGGAAGGATCCATCTGTATCAACAACAAAACTAGTGCCTTGGTTTATTTCAATTCCAATAGCCTTAACAGGGAacaagtaatattttaaatattgtgggtttaaaatgagtttttattGTAGACATATAGTAATAAAGTAttaatgatttgaattacattGAGTGTAATGTGACCAATCCTATCTGCCTGAACTATTATCCATACCATTTGAAAgtttagaaaacaaatttattAAGTATGgttctctcttttattctctccacTAGAATAAAAATATTCCCTCTTCTTCCTTTC

Function

symbol description
rmdn1 Predicted to enable microtubule binding activity. Predicted to be active in cytoplasm; mitotic spindle pole; and spindle microtubule. Orthologous to human RMDN1 (regulator of microtubule dynamics 1).

NR:

description
regulator of microtubule dynamics protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944823.2 True 1340 mRNA 0.44 10 27309016 27319449

Neighbor

gene id symbol gene type direction distance location
LOC113545483 ralyl,LOC108431401,LOC100330501 coding downstream 288241 26850710 ~ 27020775 (-)
nrn1a nrn1,nrn1a,LOC107713755,LOC107734388,LOC105890828 coding downstream 568331 26735211 ~ 26740685 (-)
LOC113545413 lyrm4 coding downstream 732718 26530759 ~ 26576298 (-)
cul2 cul2 coding downstream 862915 26425384 ~ 26446101 (-)
pard3aa pard3,LOC108431315 coding downstream 889977 26038040 ~ 26419039 (-)
LOC113545464 LOC108263316 coding upstream 472659 27792108 ~ 27795840 (-)
ccny ccny,LOC108431590,LOC107588043,LOC107739127 coding upstream 486365 27805814 ~ 27873609 (-)
pfkpa pfkp,pfkpa,LOC102201923,LOC100702375,LOC101472402,LOC102790125,LOC103143367,LOC103482255,LOC106911645,LOC106945829 coding upstream 841228 28160677 ~ 28201075 (-)
trnar-ccu NA coding upstream 925893 28245342 ~ 28245414 (-)
trnam-cau NA coding upstream 926441 28245890 ~ 28245961 (-)
G15438 NA non-coding downstream 187514 27121186 ~ 27121502 (-)
LOC117598133 NA non-coding downstream 472538 26823235 ~ 26836478 (-)
G15313 NA non-coding downstream 526547 26733362 ~ 26782469 (-)
LOC117597861 NA non-coding downstream 856701 26448656 ~ 26452315 (-)
G15174 NA non-coding downstream 862076 26446652 ~ 26446940 (-)
G15506 LOC108266640 non-coding upstream 57896 27377345 ~ 27378160 (-)
G15528 LOC108266640,LOC108431537,LOC107600138,LOC107683489,LOC107593113,LOC107713778,LOC107687503,LOC107734392 non-coding upstream 66842 27386291 ~ 27388809 (-)
G15840 NA non-coding upstream 731359 28050808 ~ 28051046 (-)
G15842 NA non-coding upstream 765812 28085261 ~ 28086818 (-)
G15849 NA non-coding upstream 856235 28175684 ~ 28176846 (-)
f13a1a.1 LOC108263067 other downstream 551773 26745018 ~ 26757243 (-)
LOC113545420 c1h18orf63 other downstream 796222 26466811 ~ 26512794 (-)
fxyd7 LOC108429921,LOC103043934 other downstream 1544322 25758055 ~ 25764694 (-)
cadm4 cadm4,LOC107714698,LOC107657657,LOC107699529 other downstream 1603501 25547034 ~ 25705515 (-)
G14258 NA other downstream 1904710 25400756 ~ 25404306 (-)
sugct sugct,LOC107687505,LOC107713787 other upstream 126109 27445558 ~ 27553506 (-)
dipk2ab cunh3orf58,dia1b,LOC108272730,LOC107687522,LOC107741829,LOC107739121,LOC107588034 other upstream 2228717 29548166 ~ 29604238 (-)
pcolce2b pcolce2,LOC108272785,LOC107566300,LOC107675309,LOC107588030 other upstream 2478304 29797753 ~ 29814814 (-)
gpr158a gpr158 other upstream 2912874 30232323 ~ 30333220 (-)
G16900 NA other upstream 3321249 30640698 ~ 30642974 (-)

Expression


Co-expression Network