gyg1b (glyg,gyg1,LOC107713835,LOC107734383,LOC107687507,LOC107600139)


Basic Information

Item Value
gene id gyg1b
gene name glyg,gyg1,LOC107713835,LOC107734383,LOC107687507,LOC107600139
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 28807495 ~ 28833465 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944829.2
TATGAGGGCAGCGCGCGCGCGGGTGTATAAATGCGTTGGTGCGCTCGCGGTGAATCCccctgtgtgcatgtgagcGCGTGCTGAGGGTCCGAGCTCGGCGGCAGTGTGGCTGGAATAAGTGAGGAGGAAGAGACATGGCAGACCAGGCATTCGTCACCTTGGCCACGAACGATAAATATGCTAAAGGCGCAGTGGTGCTGGGGAAGTCCCTGAGGAACCACAAGACCTCCAAGAAACTGGTGGTGCTCATCGGACCCCATGTGTCGGAACCGTCCAGGGCAGTGCTTCACACACTGTATGATGAGGTCAGGCTGGTGGACGTGTTGGACAGTGGGGACACCGCACACCTGGCCATGATGCAGAGACCAGACCTGGGAGTGACCTTCACTAAGCTCCACTGCtggacactcacacactactccaaatgtgtgtttatggacGCAGACACTATGgCGGTAGCGAACATTGATGAGCTGTTTGACAGAGAGGAGTTATCAGCAGCTCCAGATCCCGGATGGCCCGACTGCTTTAACTCCGGCGTGTTCGTCTTCCGCCCCTCCAACGAGACCTATGGCAAACTCCTTCAGTACTGTACAGAGCATGGCAGCTTCGACGGTGGAGATCAGGGAGTACTCAATGGCTACTTCAGTGACTGGGCCACAGCAGACATCAGAAAACACCTCCCGTTTATCTACAATATGAGCAGCATAGCAATCTACACCTACCTTCCTGCCTTTAAACAGTATGGTGCAAACGCCAAGGTGGTGCACTTCCTGGGAAAGACGAAGCCGTGGAGCTACACTTACGACCCTAATCAGAGGAGAGTGCAGGGGAACGTGCAGGACGCTTCATCGCACCCTGGCTATCTCCTGGAGTGGTGGAGACTTTACAGCAGCTGTGTGCTTCCCCTGAAGAAACAGGAACATGAAGACCAGCCTTTTGATATCAGCGCTCAGGAGGAGTTGCAGCCTCAGGCCCTGCCCGGCCCGCCTCCTCTCTCCTCAGCTGAGCGGAAACAGCGCTGGGAACAGGGCCAAGCTGACTACATGGGAATGGACTCTTTTGACAACATCGAGAAGAAGCTTGCTGCTTTCCTGAAATAAGGAATGGGGGGGTGAAGGGAGCAACGTTGTAAAAAGGGCTCCTATACAGTTTTAGAGTGATGGTTTGGAAACATGAGTGTAGATCCCATGGCTACAGTGCCATCCTGACTGGTTTTCCTTCAGCTATGCAGAACTGTCACTGCAGCGTGCCAACCTCGTCACcaattttctttcttaaaactTTTGTACACTGTGAAACTGGTATTCATTTTGACTCCGTGCTCTTcaccaaaaaacaaaagcagaaacTTTTCTTTATATTCCAGATAGTCATGTTTTATAAATCGAGCTGAATTCCGCTGTTTACACAGAGGAGGTGATGCTTTAATAGCACAGATTTCTGCGACGGCGTCGTTAGTGTTCTCATGTACCAGTCTGCTGACGCCGATCACATGACTCGCTCTCGTCATCGCTCAGTAGTGACGTCTTGTTCcagcactttttatttaaagcactTAGACTTGAAcgtaagctttttttttttttttttttttttttttttttgcttggtcACAAACTGTTACCTTGGTTTTGCCTAGAGTTTACAGCTGACTTTAAATCTGAGTTTTCATGCACTTAAGTCTACAGTTCTGCGCATTGTGAATGTCTGCATTAGTCCATGTTCACATAATGTGAGGTGAATGCTCTTCAACTCATCTGATGCTGCTGCCTTCTCTCTCATTGCAAGTGTCTTACATTTTCATCTGCACAATAAACATTGAGATCGTTAA

Function

symbol description
gyg1 Enables hexosyltransferase activity; manganese ion binding activity; and protein homodimerization activity. Involved in glycogen biosynthetic process. Located in membrane. Implicated in glycogen storage disease and glycogen storage disease XV.

NR:

description
PREDICTED: glycogenin-1 isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008466 glycogenin glucosyltransferase activity molecular_function

KEGG:

id description
K00750 GYG1, GYG2; glycogenin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944829.2 True 1834 mRNA 0.49 7 28807495 28833465

Neighbor

gene id symbol gene type direction distance location
bdh1 bdh1,LOC108272495,LOC108431739,LOC107734382,LOC107683485 coding downstream 4269 28791862 ~ 28803226 (-)
wdr37 wdr37,LOC107687510 coding downstream 169493 28601038 ~ 28638002 (-)
trnar-ccu_3 NA coding downstream 551178 28256245 ~ 28256317 (-)
trnar-ccu_2 NA coding downstream 551928 28255495 ~ 28255567 (-)
trnar-ccu_1 NA coding downstream 556367 28251056 ~ 28251128 (-)
cpb1 cpb1 coding upstream 2867 28836332 ~ 28847982 (-)
agtr1b agtr1,LOC108431759 coding upstream 17896 28851361 ~ 28866487 (-)
zic1 zic1,LOC107588038 coding upstream 192526 29025991 ~ 29033884 (-)
chst2b chst2,LOC108272780 coding upstream 917618 29751083 ~ 29754081 (-)
acbd5a acbd5 coding upstream 1001464 29834929 ~ 29852199 (-)
LOC113545501 NA non-coding downstream 354395 28436831 ~ 28453100 (-)
LOC117598396 NA non-coding downstream 372953 28417116 ~ 28434542 (-)
G15852 NA non-coding downstream 600895 28206157 ~ 28206600 (-)
G15849 NA non-coding downstream 630649 28175684 ~ 28176846 (-)
G15842 NA non-coding downstream 720677 28085261 ~ 28086818 (-)
G16228 NA non-coding upstream 188172 29021637 ~ 29021844 (-)
G16291 NA non-coding upstream 375942 29209407 ~ 29212056 (-)
G16566 NA non-coding upstream 1040142 29873607 ~ 29953285 (-)
G16582 NA non-coding upstream 1071013 29904478 ~ 29907424 (-)
G16629 NA non-coding upstream 1315877 30149342 ~ 30149588 (-)
sugct sugct,LOC107687505,LOC107713787 other downstream 1253989 27445558 ~ 27553506 (-)
f13a1a.1 LOC108263067 other downstream 2050252 26745018 ~ 26757243 (-)
LOC113545420 c1h18orf63 other downstream 2294701 26466811 ~ 26512794 (-)
fxyd7 LOC108429921,LOC103043934 other downstream 3042801 25758055 ~ 25764694 (-)
cadm4 cadm4,LOC107714698,LOC107657657,LOC107699529 other downstream 3101980 25547034 ~ 25705515 (-)
dipk2ab cunh3orf58,dia1b,LOC108272730,LOC107687522,LOC107741829,LOC107739121,LOC107588034 other upstream 714701 29548166 ~ 29604238 (-)
pcolce2b pcolce2,LOC108272785,LOC107566300,LOC107675309,LOC107588030 other upstream 964288 29797753 ~ 29814814 (-)
gpr158a gpr158 other upstream 1398858 30232323 ~ 30333220 (-)
G16900 NA other upstream 1807233 30640698 ~ 30642974 (-)
telo2 telo2 other upstream 2154658 30988123 ~ 31014649 (-)

Expression


Co-expression Network