nrn1a (nrn1,nrn1a,LOC107713755,LOC107734388,LOC105890828)


Basic Information

Item Value
gene id nrn1a
gene name nrn1,nrn1a,LOC107713755,LOC107734388,LOC105890828
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 26735211 ~ 26740685 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944830.2
CAACCACGCCATGTGGGCGTGAAGcaccatgagagagagagagagagagagagagagattaccgCACTCCTTTAACGGGGTGCACCATTTCACTCCGCTCCACTGTGCGCGTAAAAAGGCAACGGGcaccaaaaaaaagagagagggagagtaaGAATTctagagagacacacagagagagagagagtccttGAATTGCCACTCGATGCAGTCGGCTATGTCCAGCGCTCAGTTTTCGCAATCTTTTCCTTGTACAACTATCTAAAGGTTGGCACACTCTCATGGTTTTACCTCCCGTAGGATGGGATTAACTTTGTCCGGAAGATACATCTCACTGGTGCTGGCTGTTCAAATAGCATATTTGCTCCAGACGGTTGGAGCGGCGGGGAAATGTGACACCGTGTTTAAGGGCTTCTCAAACTGCCTGCTTCAGCTGGGAGAGAACATGGCCAGCTATCCACAGGAGCTGGACGAGAAGGAGAACCTGCAAACCATCTGCACATATTGGGACGACTTCCACTCGTGTGCCACCACAGCGCTGGCGGACTGCCAGGAGGGAGCGACGGAGCTGTGGGAGAAACTCAAGAAGGAGTCGAGAAACCTGGAGTTTAAAGGCAGTTTGTTTGAACTGTGCGGTGAAGGAAACGACGCGAGCACACCATCAGCCTCTCCAGCCGGGCTCCCCCTGCTGCTCAGCTCCCTCTCCGCCCTGCTCACATGGATCCAGTTTTAGCGCCCAGCACCAAACCCAGAAGATcaccacaaagacatttttagcTCACATGAAAAGAAGAATACGGGAAACCTTGGGTGGGGTGGGTTGGC

Function

symbol description
nrn1a Predicted to be involved in neuron projection extension. Predicted to act upstream of or within nervous system development. Predicted to be located in plasma membrane and synapse. Predicted to be anchored component of membrane. Predicted to be anchored component of plasma membrane. Is expressed in nervous system; neural tube; and trigeminal placode. Orthologous to human NRN1 (neuritin 1).
nrn1 Predicted to enable identical protein binding activity. Predicted to be involved in neuron projection extension and regulation of synaptic vesicle exocytosis. Predicted to be located in extracellular space. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in glutamatergic synapse. Predicted to be anchored component of plasma membrane.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007399 nervous system development biological_process
GO:0031225 anchored component of membrane cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944830.2 True 825 mRNA 0.53 3 26735211 26740685

Neighbor

gene id symbol gene type direction distance location
LOC113545413 lyrm4 coding downstream 158913 26530759 ~ 26576298 (-)
cul2 cul2 coding downstream 289110 26425384 ~ 26446101 (-)
pard3aa pard3,LOC108431315 coding downstream 316172 26038040 ~ 26419039 (-)
nrp1a nrp1,nrp1a,LOC106578544,LOC107565689 coding downstream 894268 25772592 ~ 25840943 (-)
si:ch211-79k12.1 LOC108265448 coding downstream 1012967 25713466 ~ 25722244 (-)
LOC113545483 ralyl,LOC108431401,LOC100330501 coding upstream 110025 26850710 ~ 27020775 (-)
rmdn1 rmdn1,LOC107729932,LOC107756855,LOC107668150 coding upstream 568331 27309016 ~ 27319449 (-)
LOC113545464 LOC108263316 coding upstream 1051423 27792108 ~ 27795840 (-)
ccny ccny,LOC108431590,LOC107588043,LOC107739127 coding upstream 1065129 27805814 ~ 27873609 (-)
pfkpa pfkp,pfkpa,LOC102201923,LOC100702375,LOC101472402,LOC102790125,LOC103143367,LOC103482255,LOC106911645,LOC106945829 coding upstream 1419992 28160677 ~ 28201075 (-)
LOC117597861 NA non-coding downstream 282896 26448656 ~ 26452315 (-)
G15174 NA non-coding downstream 288271 26446652 ~ 26446940 (-)
G15163 NA non-coding downstream 328082 26403523 ~ 26407129 (-)
G15111 NA non-coding downstream 420884 26310023 ~ 26314327 (-)
G15012 NA non-coding downstream 625378 26104667 ~ 26109833 (-)
LOC117598133 NA non-coding upstream 82550 26823235 ~ 26836478 (-)
G15438 NA non-coding upstream 380501 27121186 ~ 27121502 (-)
G15506 LOC108266640 non-coding upstream 636660 27377345 ~ 27378160 (-)
G15528 LOC108266640,LOC108431537,LOC107600138,LOC107683489,LOC107593113,LOC107713778,LOC107687503,LOC107734392 non-coding upstream 645606 27386291 ~ 27388809 (-)
G15840 NA non-coding upstream 1310123 28050808 ~ 28051046 (-)
LOC113545420 c1h18orf63 other downstream 222417 26466811 ~ 26512794 (-)
fxyd7 LOC108429921,LOC103043934 other downstream 970517 25758055 ~ 25764694 (-)
cadm4 cadm4,LOC107714698,LOC107657657,LOC107699529 other downstream 1029696 25547034 ~ 25705515 (-)
bcam bcam other downstream 1247786 25395487 ~ 25487425 (-)
f13a1a.1 LOC108263067 other upstream 4333 26745018 ~ 26757243 (-)
sugct sugct,LOC107687505,LOC107713787 other upstream 704873 27445558 ~ 27553506 (-)
dipk2ab cunh3orf58,dia1b,LOC108272730,LOC107687522,LOC107741829,LOC107739121,LOC107588034 other upstream 2807481 29548166 ~ 29604238 (-)
pcolce2b pcolce2,LOC108272785,LOC107566300,LOC107675309,LOC107588030 other upstream 3057068 29797753 ~ 29814814 (-)
gpr158a gpr158 other upstream 3491638 30232323 ~ 30333220 (-)

Expression


Co-expression Network