gad2 (gad2,LOC107687529,LOC107675215)


Basic Information

Item Value
gene id gad2
gene name gad2,LOC107687529,LOC107675215
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 30026423 ~ 30060595 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944833.2
CAGAGCGCCGTTAGACGTGAACGAACCGGTGGCGGCGGCGGCGCGCGCGGTGgcggtgatggtgatggtgatggtggcgTCACCTCTCGCCTCCTGATTTCCTTCTCAAGGCGGATTATGAAACTGCGTCAGAGAGAATAATACACGAGTTTTTAAAGttaattgtgtattttgtgcgtgacatccaaaaaaaaagggagagagagagagagagagcgcgcatCCATCCGGGCGCGCGGTGAATGTGGCCCCTTACAGCCGGAGAGAGGAGAGGACGCACTGGGTGGAGGATCCGCTGAAAACCCGGCGGCACAGAAACGcgtttttagttttgtttattttattttattgtttgtttgtttgtttttgttttgatttttctctCCTCCACCCGTCCTGTGGGTCTTTCTCTCCCGGTCTGGATGGCTGCTGCTCGTCTCCGCGCGTCCTAGAGagtttaagaaaagaaaaaataacgctggagatttaattttattttttatttttttatttatttttttgcctggCCATGGCTTCGCACGGCTTCTGGTCTCTGGGCGCAGAAAACGGCGGAGACAGCGGCGACCAAAACCCCATCACGGCCAGGGCTTGGTGCCAAGCGGCGGCCCAGAAATTCACCGGAGGCATCGGATCCAAATTATGTGcTCTGCTGAATGTGGGAGAGGTGGAGAAGAGCGCGGATGGTGCTGAGAAACAGGAGGCAGTGAGCTGCAACTGCAGCACCAAACCCTGCAACTGCTCCAAAACTAACCTGGGCTTCTCCGAGCTCTActctacagACCTTCTCCCCGCACTGGACGGCGACCTGAAGACGATGACTTTCCTGCAGGAGGTGGTGGATATTCTCCTGGCGTACATCGTGGAGTCTTTCGACAGGTCGACTAAAGTGATTGATTTTCATTACCCCAGTGAGCTGCTGCAGAGGAATAACTGGGAGCTGTCTGATGAACCTGAAACTCTGGATGATATTCTGATCAGCTGCCGCGCCACGCTCAAGTACGCCATCAAAACAGCTCACCCCAGGTACTTCAACCAGCTCTCCACCGGATTAGACATGGTCGGCCTCGCTGCTGACTGGCTCACCTCCACCGCCAACACCAACATGTTTACTTATGAGGTGGCTCCTGTGTTTGTCCTACTGGAATACGTCACGCTGAAGAAGATGAGAGAGATCATTGGTTGGGAAGATGGTCGAGGGGATGGCATCTTCTCACCAGGTGGCGCCATTTCCAACATGTACGCCATGTTGCTGGCTCGCTACAAGATGTTTCCTGAAGTCAAAGAGAAAGGGATGTCATCAGTGCCCAAGCTGGTGGCCTTCACGTCCGAGCATAGTCACTTCTCGATCAAGAAGGGAGCTGCAGCTCTTGGAATAGGAACAGAGAGCGTGATTTGTATCAAAGCCGATGAGAGGGGAAAGCTGATCCCTTCTGACCTGGAGCGGAGGATAGTGGAGGCCAAGCAGAAGggTTATGTACCATTCTTTGTGAGTGctacagctggaactacagtGTACGGAGCATTTGATCCTCTGATTGCCATCTCAGACATCTGTAAGAAGTATAACATTTGGATGCACGTGGATGGCGCCTGGGGAGGGAGTATGCTCATGTCCCGGAAACACAGGTGGAAACTCAACGGAGTCGAGAGGGCGAACTCCATGACGTGGAACCCTCATAAGATGATGGCCGTGCCCCTGCAGTGCTCGGCTCTGCTCGTCAGAGAGGAGGGTTTGATGCAGAGCTGTAACCAGATGCAGGCGTGTTAcctgttccagcaggacaaACACTACGACCTGAGCTACGACACCGGAGACAAGGCGCTGCAGTGCGGACGCCACGTCGACATCTTCAAGCTCTGGCTCATGTGGCGAGCTAAGGGCACTATTGGCTTCGAGGCTCAGATAGATAAATGTCTGGAGTTGTCTGAATATCTCTACAACAAGATAAAGGACAGAGAAGGGTACgagatggtgtttgatggaaagCCTCAACACACCAACGTGTGTTTCTGGTACCTTCCTCCCGGCCTGCGCTACCTGGAAGACAAAGTGGAAAAGATGAAGCGTCTGCACAAGGTTGCTCCTACGATCAAAGCTCGGATGATGGAGTACGGGACGACCATGGTGAGCTATCAGCCGCAAGGAGACAAAGTCAACTTCTTCCGCATGGTCATCTCCAACCCAGCTGCCACCTTCGAGGACATCGACTTCCTCATCGAAGAGATCGAGCGACTCGGACAGGACCTGTAACGCTCCCAAAGTCTCCATGTACAAAATGTTTGTTGTGAATGTACggtaatttctttcttttttcctcctcttcttcaaaGTCTAATATAGGTGAATATGTTTAACGTCAGAAAAGTCCGTATTTAAGTATCGTAGTACTGTCGTGGACGTCTTGGTCCGAAGCCCTGTAGAAGTGTTAATGTCCGCTCCTGTCTATGTTAGCGTAAGCTTTACATGTGTGGTGTGAGCGTGAAGAATTATTTGCTTCAATCCTGTGCAATAGGTCACAATTTATAGCGAATCTAACTGACCAGATATTCTAAGTGCCAGATGTCACTATAGAGATATAAGAAGgaaagagatttatttaaatagatgcataagagagagagagagagcatttaGTATTACCTTAGTATTGCCTTTACATTCACAGGCAGCATTTGAGTGTCATTAATTAGAGAATACAGTAGAAAATAcactgcagggtttttttttagccatgTAGGGTTTAATTCCTGCTGGAGCACAACTCTCGTGTTATATTAAACCTAGCACGAGACATAAAGAAGCTTTACCTAGAATGGTTTCAGAGTAAAAGGCTTTTATCCAGTTGAAAACGCAGTAAGCAGAAATGTATTGTATCTATAGCAGGAGGAAGAGTGGCTGGAAGATCTGAAGCTGGCTGAACCAAAAGGTCTTAACTAGAGTGTAATAACAGCTAAGCACAATTTCTAGAGAATAATTTATTCTGACCAGCATAAAGCGCATACtccagactgactgactgaatgactgactgaatgactgactgactgaatgaatgaaaaatccCAATAAGGGTGCCACTTATGGTTAGATGATTACCTTCAGAATAAAATTAAGCCAGATAGACCAATAGCAAATTATTTAAGAACTATGAGATATGATGGTttcttatgatttttttttatcagggtTGGAAtgtcaggaaaaataaaattactttttgAGTAGGAAGGGAAAAGGTTTTATTGGTTCATAAAAACACATCCATCTGACATCCAGATgtttataatatgtaatatcatCATTGAAATATCATCATtgcaatcatcatcatcatcatcatcatcattcagaGACAATGCATGTGTCCGTGACAGCATTAAGTCCTATTCAGACTGGATTAGTTTATCTGAGGAGGTGGGGTAATGTAGTAATTCCTGGAATATCTCTGGAATTGTAATCCTGTATGAATCCATcatgtcattcatttattatggaCTCCACATGCAAAGATTATGTCACATTTTAACTAAAACAAGACTAGTAAAAATAACACCAGGTAATATATAACTCATCCAAACGGACATGCTGATAAAGATTCCCTTATTTCCTGTCAGAAAAGAGGTTTTGAGCTTTTTCTTTAGTATAAAGACACACCAGGAAGTGTTCGCTTCCTTCCGTCGTCCACATCTGAACCCAAACCGAGTTTAAAAGtcagaacaataaaaaatagCCAGTGACATTTCTGGGGGTTTTAGATGAGTTAGAAACTTCCTAGCACAGGTTTTAACGTACAGACATGTTATGGTCACGTGATCtactaatgaccaatcacaacTTGTGTGGCCTTATAATAAACACACTTATAATAAACatcaaaacaatcagtttgtattaaaatgaggtatGTTTAGTGCTGGAATTTTTAGTGTAACGACCATATGTGCATTGTGAAGTCAATACAGTGTAGTGTTGCCTTCCGGCAACGTTTCTCAACAGACATATGTCAGGAAATCTTATCCCAGTTGAATAGTACTTTACtgtactataaataaatatatataaatatttataggaCAAACTGAGCATATCATTGCAATGTAGCAgctaatgtttacatttaaattccAAAAATTTGAGTTTGCCTGCTTTCAGCAAGCAAATTTTATGCCTGGTCTTAGTGCAAAATCAGTTTTTGACCATTTGGTGCAACAGCCTTGTAAGTTACAACCAAACAATTCATAAGCCCTTTTGGTGCAGTCGGCCCCTGGAGATCTTTTTCTACAGCCatgagtaaaataataattgaagaCTACAAGGCTGAAATGTCAACAGAGAAGATTTTAAATCAAGAAAGAAGTGTGTGAAGACTAAAAGAAGAGCTTGTAGTTGTACAGTTGTACaaaatgctattattattattattattattattattagtattagtattattattattattattattacaacctGAGTCTGTACCTGTGGCTCTTTCTGACAAGATGATGTCACTGATGGATATCTGTACTTCCTGTCTGAGAGTGTTTGTCTACAAATAGCTGAAAGATGGCAGAGGTGTTAAATCCAGAGCAAAGCGTTTGTATTCAGAGCACAAAAGACTTTTCTAGACCAGGAATTAGACAACATTAATCTTAAGTTAGAATATTTAGCAGGTTCTGACAAAGAACCGAGatgttaataaataatccaGTAAATATAGAGtaggtgtaagtgtgtgaggtCTGTATCTTTAGCAGACAGCAACAAATATCAATAgatcttaacacacacacacacatatatatatatatattatatatatatacgcagGCGCTAAGCGATGAAACATTTCATTCTTATCGCAGGATCAGTCATCTGTTCCTGTGAATAATTCACTCTTACATACATAAgcatatagtgtactgtagtgaaTTAGTGCTAGAGTTTAAATCAACCTATAGCGATGAAACAAAATATTAGCAATATTGCTAAGTACATGCACTTagaccaaaagaaaaaaattaaaactgtttCATAGTTTAAGCTGAAAATGGTCATCATTTAGTGATATTGCTAAAATTGAATCAGATAAGCTAAATAAGATTCAAGATGTAATGAAGACTGGACATTTCACTGCTACACCAGCAGAGGGTATAATCACCAGTGTCTCACCAGAGTACTTCCTGTTTACCTCCTGGTTGTAGAGTAATtaagcattcattcattacgaagtcttgccaatcctAGTGTTTGCTTAAGTTCCAAGCCGTGTTATTGCTGATTACCTTTAtgctttctgtctcttgaaCCGTTTTGTTTATCAGACTTATCCAATGGCCTTGTGGAACATAATTAtctgggatttttattttttaacctcTACCTGCCTTGTGGATATATGGATTACGTTTTAACTTTGTTTGCTGTGAACTTTATTAAGCCTCTTGTAAATGGATCCTCACTCTGCATTTGAGTCTCCATTGTTACAGAAGATTTTGTGGATCAGCGGAGGTGTGAGAGGAGCTGTGCTAAGTGGTAGCCTCCCAAGGTCAGTTATTGGGAGCTTACGCTCAACAAGTTCACCAGATTGCTACCACTATGGAGGAACTAATCAGAGTTTACAGGGGCATCATAAGACAGATCCGCTGACAGAGTGTATACTGCTACCCCGGAAGTCAGCTCGCAGATACCTCGCTTAGCACCTGAAAAATAGGAAATACAGAAGACTGCTAGACTTGGCTACCACCATTTACCATACACAAAGTTCATCAAGGCCAAAAGGTaatccaaaaaaacaaagcaatgaTTCAAGGCACACAAAGGTAATCATCGATAACAAGGATCGGAACTTGgggattggcaagacttcgcaatgaatGAAGGTCTACAAACTGCTTAATTACTATAAAACCAGGAAGTAACCAGCAAGTGGATGGCTCTGGTGAGAGTGACCTCTGGTGGCAGGGAGGAGTATCCATTGTCCTCATTACACAACAATTAATCTCTGTAGCACTTAGTTTAACTTCTGTGAGTTTTCCATTAACAGTCCACTCTAATGTTAGAAATTCAatcaatcattaaaaaaaacatttaataaagttattgtTGGTCATGATCTGTAAATGGACTTCTTGACTAAGCACATATCTATGTGAATACatccatgtactgtatataaaagagTCTATTTGTGaggtaaaatattattttctctattcaaataataatatgtaattgtaatactatatataatatatatactatatatactcaTTCTGCTTGTGTATACAtgatttatgtgtatatttatctGTGAAGGAACATGCTTTAATTTAACTGCATTTTTGTGCTACAAACATTAATCtaagaaaaaatgttttagacTCCAATGAAGTGAAATTCCAGCGATTATGGAAAGCCATTTCTGAACCGAAGTCGGTTATCTTTGTGCCCAAGTGATCTACTTGACATTATGTGccaatatgtattttttgtgcGTTTGTAACTGTATTGCCTTAGTATTTATTGCTGGTATTGTCTCGTTCTCCACGTGGGGAACTTTGTGCACTTTAGATTTCCTGTAAGTCCAGTGGATGTTCATAGTTTTAACTGTTTTGATGAAACTGTGATTCGTCTGAATGTGTCCCTGTTTTTGGATTTGGATGAAAAGTCACGTGTGATGTTTAAATTTGCTTCAGTTTGCGTTTGTAGTTTGCTAAATACATTGCTGCTTATCTGTATCCTTAACATGTACAACGAatgatttttcctctttttattttcatggaGGTGTATGTAAGGTCTGTCCTTGTTCCAAATTAGCAAGTGGACACAAAAGAAGTTGTAAAAAAGCTGTAGTGTCCTGGGCACGTTCTTTAtgttgtctctttttttctcctgctgctgctgctgctgctgctgctgctatcGGGCCTGCAAGTCTTTGCATGTGCATGAACGCCTCGCTTTTCCAAGCCTGTGATGTACAATATTTACCCAAATATCTACTGTGTGATAGTCTTAGTGCTGAATGTATAGCTTCGCTTTAAATGTAGTGCTTCGTCGCTAGCTTGATGGCTCAGTGTAGTAGTGTCGCTTCAAACATATTTATCCGCTAAGCTAGCATGCTCTGTGTGGCTAGAAATCGTCTGCTTCTGCGATCtaatctctatctctctgtctatcgcTCTATCGTCGTCTCtaatattagtgtgtgtagCTCTCCAGcatgcctatatatatatatgtagtctgaatccttccttccttctacTGCACTCTgtcttcctctttcctctttctctttcttgctAAAGCTTTGCCCCTGCAAGCAGCATTCAGACCTTTAAGGGCAGTGCACGCTCGCTCTTTAGCAGCTTGGTGCCCGAGGAACAACAGCTAGACCTTACATGAGCTTTATCTTCATCCGACCAGACAGGGTCAACATCGTTATATTGGTTAAAGCTAATGTGAGTGTCTGTGATTTGAATTCAGAGGACGTTTGTAAGCCAGTGTGTCAAAACAGATTATAATTCAGCCTCCAGTTCTCTTGAAAATTTACCGTATGTGACTGGGAAATCACGAATAAATATTCTTGTGAAAACATT

Function

symbol description
gad2 Predicted to enable glutamate decarboxylase activity and pyridoxal phosphate binding activity. Acts upstream of or within gamma-aminobutyric acid biosynthetic process and neurotransmitter biosynthetic process. Is expressed in central nervous system; eye; and neurons. Human ortholog(s) of this gene implicated in gestational diabetes; schizophrenia; and type 1 diabetes mellitus. Orthologous to human GAD2 (glutamate decarboxylase 2).

NR:

description
glutamate decarboxylase 2

GO:

id name namespace
GO:0042136 neurotransmitter biosynthetic process biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016831 carboxy-lyase activity molecular_function

KEGG:

id description
K01580 E4.1.1.15, gadB, gadA, GAD; glutamate decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944833.2 True 7629 mRNA 0.41 16 30026423 30060595

Neighbor

gene id symbol gene type direction distance location
apbb1ip apbb1ip,LOC107571746,LOC107687528 coding downstream 33312 29942300 ~ 29993111 (-)
trnaf-gaa NA coding downstream 37133 29989218 ~ 29989290 (-)
pdss1 pdss1,LOC106590306,LOC107675251,LOC107739114 coding downstream 101213 29918872 ~ 29925210 (-)
acbd5a acbd5 coding downstream 174224 29834929 ~ 29852199 (-)
chst2b chst2,LOC108272780 coding downstream 272342 29751083 ~ 29754081 (-)
myo3a myo3a coding upstream 6928 30067523 ~ 30111302 (-)
LOC117597071 myo3a coding upstream 54710 30115305 ~ 30163697 (-)
LOC117597070 NA coding upstream 128960 30189555 ~ 30190190 (-)
anxa13 anxa13,LOC108272932,LOC108431991,LOC107570049,LOC107675241,LOC107588022 coding upstream 132456 30193051 ~ 30208074 (-)
ptchd3a ptchd3 coding upstream 278355 30338950 ~ 30344720 (-)
G16566 NA non-coding downstream 73138 29873607 ~ 29953285 (-)
G16582 NA non-coding downstream 118999 29904478 ~ 29907424 (-)
G16291 NA non-coding downstream 814367 29209407 ~ 29212056 (-)
G16228 NA non-coding downstream 1004579 29021637 ~ 29021844 (-)
LOC113545501 NA non-coding downstream 1573323 28436831 ~ 28453100 (-)
G16629 NA non-coding upstream 88747 30149342 ~ 30149588 (-)
G16709 NA non-coding upstream 114429 30175024 ~ 30175364 (-)
G16721 NA non-coding upstream 188869 30249464 ~ 30249677 (-)
G16747 NA non-coding upstream 270802 30331397 ~ 30331613 (-)
LOC117597677 NA non-coding upstream 319249 30379844 ~ 30382575 (-)
pcolce2b pcolce2,LOC108272785,LOC107566300,LOC107675309,LOC107588030 other downstream 211609 29797753 ~ 29814814 (-)
dipk2ab cunh3orf58,dia1b,LOC108272730,LOC107687522,LOC107741829,LOC107739121,LOC107588034 other downstream 422185 29548166 ~ 29604238 (-)
sugct sugct,LOC107687505,LOC107713787 other downstream 2472917 27445558 ~ 27553506 (-)
f13a1a.1 LOC108263067 other downstream 3269180 26745018 ~ 26757243 (-)
LOC113545420 c1h18orf63 other downstream 3513629 26466811 ~ 26512794 (-)
gpr158a gpr158 other upstream 171728 30232323 ~ 30333220 (-)
G16900 NA other upstream 580103 30640698 ~ 30642974 (-)
telo2 telo2 other upstream 927528 30988123 ~ 31014649 (-)
G17199 telo2 other upstream 941814 31002409 ~ 31003309 (-)
rnpc3 rnpc3 other upstream 1524146 31584741 ~ 31611972 (-)

Expression


Co-expression Network