fgf21 (LOC108263130)



Basic Information


Item Value
gene id fgf21
gene name LOC108263130
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 33319864 ~ 33326553 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026946418.1
tctttctctccatctgtccatgATTCCTCTCCAATATTGGCCTTCAATGATCAAGTTCGCCAGAGACACCTGTACACAGATAATAAACACCACAGCCTGTTTGTTGAGATTTTATCCAATGGCACAGTATCAGCAACTCAGAGTCAGTCACTTTACAcggttTTAGAGCTAAAAGCTGTTAAACCGGGTTACACGGCGATTCGGGGTGTGATGTCATCATTGTACCTGTGTGTGAACGCAGCCGGTCACTTATTTGCTCTGggtGTGTTTCTGGATGTTGACTGTTCCTTCAGTGAGATGTTACAGCCTGATGGTTacactcacttcctgtctgctcACCACAGACTTCCTGTATCCCTCAGTTTTAACGGTCCTCCtgggaaacacacactcaccttctcTCAGTTTCTACCGCTTAGAACCCATCTGTTTATGGAGATACAGGGATATGAAGAACCATCGAGTTTTCTATCAGCTGCAGATTTTGATTCAGATGATCCACTaagactgacaaacacacatcagAACCTGAGAAGTCCGTTGTTCCACATCGACCAATAA

Function


NR:

description
fibroblast growth factor 21

GO: NA

KEGG:

id description
K22429 FGF21; fibroblast growth factor 21

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026946418.1 True 561 mRNA 0.45 4 33319864 33326553

Neighbor


gene id symbol gene type direction distance location
mybpc2b mybpc2b,LOC108272997,LOC107667118,LOC107718022 coding downstream 35447 33250847 ~ 33284417 (-)
LOC117597388 NA coding downstream 347658 32958621 ~ 32972206 (-)
LOC113524649 LOC108270753,LOC108270747,LOC108263642,LOC108257668,LOC108264948,LOC108268379,LOC108260129 coding downstream 365933 32923867 ~ 32953931 (-)
ccdc78 LOC108269459 coding downstream 424014 32876470 ~ 32895850 (-)
fam234a fam234a coding downstream 623153 32687597 ~ 32696711 (-)
LOC117597600 LOC108261633,LOC108268894,LOC108273545,LOC108263642,LOC108270753,LOC108263117,LOC108410737,LOC108261292,LOC108412218 coding upstream 102371 33428924 ~ 33453389 (-)
LOC113524648 LOC108270747,LOC108273219,LOC108261257,LOC108257668,LOC108273692,LOC108260129,LOC108274210 coding upstream 135225 33461778 ~ 33472267 (-)
LOC117595708 LOC108263642,LOC108270747,LOC108274210,LOC108273544,LOC108273692,LOC108270753,LOC108261406 coding upstream 172731 33499284 ~ 33506987 (-)
LOC117595702 LOC108270753,LOC108273692,LOC108257668,LOC108273544,LOC108273546,LOC108264948,LOC108273691,LOC108261167,LOC108412230 coding upstream 187942 33514495 ~ 33527798 (-)
LOC113524637 LOC108268628 coding upstream 204989 33531542 ~ 33546245 (-)
G18299 NA non-coding downstream 86825 33232818 ~ 33233039 (-)
G18280 NA non-coding downstream 128656 33190547 ~ 33191208 (-)
G18279 NA non-coding downstream 130190 33189196 ~ 33189674 (-)
G18275 LOC108277266 non-coding downstream 146985 33172306 ~ 33172879 (-)
G18231 NA non-coding downstream 168988 33150260 ~ 33150876 (-)
G18323 NA non-coding upstream 25411 33351964 ~ 33352182 (-)
LOC117597510 NA non-coding upstream 87127 33413680 ~ 33414566 (-)
G18412 LOC108268894,LOC108263642,LOC108261257,LOC108268260,LOC108273545,LOC108273219,LOC108270753,LOC108273691 non-coding upstream 87139 33413692 ~ 33454711 (-)
G18418 NA non-coding upstream 115122 33441675 ~ 33442220 (-)
G18423 NA non-coding upstream 123025 33449578 ~ 33450920 (-)
LOC113523757 LOC108263642,LOC108270747,LOC108268894,LOC108263117,LOC108264948,LOC108268379,LOC108257668,LOC108261292 other downstream 364161 32899869 ~ 32955703 (-)
G18097 ift140 other downstream 723059 32589902 ~ 32596805 (-)
G17630 LOC108267341 other downstream 1267310 32000625 ~ 32052554 (-)
rnpc3 rnpc3 other downstream 1707892 31584741 ~ 31611972 (-)
G17199 telo2 other downstream 2316555 31002409 ~ 31003309 (-)
G18432 NA other upstream 244826 33571379 ~ 33571830 (-)
dnah3 dnah3,LOC108263105 other upstream 246200 33572753 ~ 33616366 (-)
G18848 NA other upstream 688495 34015048 ~ 34037333 (-)
LOC113524641 cox6b1,LOC108270924,LOC108413555,LOC107687105,LOC107556657,LOC107753036,LOC105926733,LOC107667149 other upstream 939751 34266304 ~ 34270306 (-)
G19006 LOC108270747,LOC108273692,LOC108263642,LOC108270753,LOC108273544,LOC108261406,LOC108264948 other upstream 957513 34284066 ~ 34998396 (-)

Expression



Co-expression Network