LOC117597070


Basic Information

Item Value
gene id LOC117597070
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 30189555 ~ 30190190 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303618.1
agacagagagagacagagaaggagacagagagacagagagagacagaggagacagaggagacagagaaggagagagacagagagagacagagagagacagagagagagagagacagagagagagagagagagagagagagagacagagagagacagagagagacagagagagagagagagacagagaggagacagagaaggagagagagagacagagaaggagacagagagagagagagagagacagagagagacagagagagagagagagagacagagagagagagagagagagacagagagagagagagagagacagagagagacagagagagagacagagaaagagagacagagagagacagagagaggagacagagaaacagagacagagagagacagagagaggagacagagagagagagagagagagagagagagagagacagagagagagagagagagagagagaagacagagagagagagagagagagacagagagagagagagagagagagacagagaaggagacagagaagagagagagagagagagagagacagagagagagagacagagagagagagagagagagagagagagagagagagagagagagagagagagagagaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303618.1 True 636 mRNA 0.50 1 30189555 30190190

Neighbor

gene id symbol gene type direction distance location
LOC117597071 myo3a coding downstream 25858 30115305 ~ 30163697 (-)
myo3a myo3a coding downstream 78253 30067523 ~ 30111302 (-)
gad2 gad2,LOC107687529,LOC107675215 coding downstream 128960 30026423 ~ 30060595 (-)
apbb1ip apbb1ip,LOC107571746,LOC107687528 coding downstream 196444 29942300 ~ 29993111 (-)
trnaf-gaa NA coding downstream 200265 29989218 ~ 29989290 (-)
anxa13 anxa13,LOC108272932,LOC108431991,LOC107570049,LOC107675241,LOC107588022 coding upstream 2861 30193051 ~ 30208074 (-)
ptchd3a ptchd3 coding upstream 148760 30338950 ~ 30344720 (-)
kmt2ca kmt2c coding upstream 209965 30400155 ~ 30561913 (-)
xrcc2 xrcc2 coding upstream 391827 30582017 ~ 30586690 (-)
trnah-gug NA coding upstream 442876 30633066 ~ 30633137 (-)
G16709 NA non-coding downstream 14191 30175024 ~ 30175364 (-)
G16629 NA non-coding downstream 39967 30149342 ~ 30149588 (-)
G16566 NA non-coding downstream 236270 29873607 ~ 29953285 (-)
G16582 NA non-coding downstream 282131 29904478 ~ 29907424 (-)
G16291 NA non-coding downstream 977499 29209407 ~ 29212056 (-)
G16721 NA non-coding upstream 59274 30249464 ~ 30249677 (-)
G16747 NA non-coding upstream 141207 30331397 ~ 30331613 (-)
LOC117597677 NA non-coding upstream 189654 30379844 ~ 30382575 (-)
G16897 NA non-coding upstream 446893 30637083 ~ 30637584 (-)
LOC117595754 NA non-coding upstream 447659 30637849 ~ 30640024 (-)
pcolce2b pcolce2,LOC108272785,LOC107566300,LOC107675309,LOC107588030 other downstream 374741 29797753 ~ 29814814 (-)
dipk2ab cunh3orf58,dia1b,LOC108272730,LOC107687522,LOC107741829,LOC107739121,LOC107588034 other downstream 585317 29548166 ~ 29604238 (-)
sugct sugct,LOC107687505,LOC107713787 other downstream 2636049 27445558 ~ 27553506 (-)
f13a1a.1 LOC108263067 other downstream 3432312 26745018 ~ 26757243 (-)
LOC113545420 c1h18orf63 other downstream 3676761 26466811 ~ 26512794 (-)
gpr158a gpr158 other upstream 42133 30232323 ~ 30333220 (-)
G16900 NA other upstream 450508 30640698 ~ 30642974 (-)
telo2 telo2 other upstream 797933 30988123 ~ 31014649 (-)
G17199 telo2 other upstream 812219 31002409 ~ 31003309 (-)
rnpc3 rnpc3 other upstream 1394551 31584741 ~ 31611972 (-)

Expression


Co-expression Network