LOC113545413 (lyrm4)


Basic Information

Item Value
gene id LOC113545413
gene name lyrm4
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 26530759 ~ 26576298 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304296.1
GCTCAGGCACTCCGTTAGAAGGCTCTCCGGGGTCCTGATTTGACAGTGAGAGAAGATGGCGGCGCCCAGCAGAACGCAGGTGTTAGCGCTGTATCGGATGCTTTTGAGGGAAAGCAAAAAATTTCCTGCGTACAACTACAGGACATACGCCCTGCGAAAGGTACGTGATGCGTTCAGAGAGAACCGGAATGTGGAGGACCCAAAAGTTCTGGAGCAGCTGTTGAGCAAAGCATGTGACAATCTGGCCATCATCCAGAGACAGGCAGCCATAGGAAAGATGTACGAGATTCAACGGACCGTAGTGGAATCCAAGCCGAAGAAATTCATCTGATTGGACATGAGTGGACTACGAAGCTCTCTGTGGAGGTGGACCAAGGCTTTTCAGAAAACCACTGACTGTCTAACACGCCTACATCAGGACCTAGGCtgagggatgatgatgatgatgatgatgccgTTCAAGCAATGGCTTGCTTTGTATACATTCACTGTTCCCAGATCACTTACACTCGTTCTGCCTCGTTATTAAGTCAACTGTGCTGAAGTGCACACCTCACTGAGTGCAAATACAGCACAgcaaacacaccacacagccTGCTGTTACAGCCCACCATTAGGAGTCTGTCGTTTTTAAGTTTGTAGGTACATGTCATGTATGTATTATTTGTCCTGTTTCATTAAAGGTATGTTACGTTCAGGCACCACGA

Function

symbol description
lyrm4 Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 19. Orthologous to human LYRM4 (LYR motif containing 4).

NR:

description
LYR motif-containing protein 4

GO: NA

KEGG:

id description
K22069 LYRM4; LYR motif-containing protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304296.1 True 707 mRNA 0.48 3 26530759 26576298

Neighbor

gene id symbol gene type direction distance location
cul2 cul2 coding downstream 84658 26425384 ~ 26446101 (-)
pard3aa pard3,LOC108431315 coding downstream 111720 26038040 ~ 26419039 (-)
nrp1a nrp1,nrp1a,LOC106578544,LOC107565689 coding downstream 689816 25772592 ~ 25840943 (-)
si:ch211-79k12.1 LOC108265448 coding downstream 808515 25713466 ~ 25722244 (-)
rps19 rps19,LOC107657656,LOC100689943 coding downstream 1002828 25521489 ~ 25527931 (-)
nrn1a nrn1,nrn1a,LOC107713755,LOC107734388,LOC105890828 coding upstream 158913 26735211 ~ 26740685 (-)
LOC113545483 ralyl,LOC108431401,LOC100330501 coding upstream 274412 26850710 ~ 27020775 (-)
rmdn1 rmdn1,LOC107729932,LOC107756855,LOC107668150 coding upstream 732718 27309016 ~ 27319449 (-)
LOC113545464 LOC108263316 coding upstream 1215810 27792108 ~ 27795840 (-)
ccny ccny,LOC108431590,LOC107588043,LOC107739127 coding upstream 1229516 27805814 ~ 27873609 (-)
LOC117597861 NA non-coding downstream 78444 26448656 ~ 26452315 (-)
G15174 NA non-coding downstream 83819 26446652 ~ 26446940 (-)
G15163 NA non-coding downstream 123630 26403523 ~ 26407129 (-)
G15111 NA non-coding downstream 216432 26310023 ~ 26314327 (-)
G15012 NA non-coding downstream 420926 26104667 ~ 26109833 (-)
G15313 NA non-coding upstream 157064 26733362 ~ 26782469 (-)
LOC117598133 NA non-coding upstream 246937 26823235 ~ 26836478 (-)
G15438 NA non-coding upstream 544888 27121186 ~ 27121502 (-)
G15506 LOC108266640 non-coding upstream 801047 27377345 ~ 27378160 (-)
G15528 LOC108266640,LOC108431537,LOC107600138,LOC107683489,LOC107593113,LOC107713778,LOC107687503,LOC107734392 non-coding upstream 809993 27386291 ~ 27388809 (-)
LOC113545420 c1h18orf63 other downstream 17965 26466811 ~ 26512794 (-)
fxyd7 LOC108429921,LOC103043934 other downstream 766065 25758055 ~ 25764694 (-)
cadm4 cadm4,LOC107714698,LOC107657657,LOC107699529 other downstream 825244 25547034 ~ 25705515 (-)
bcam bcam other downstream 1043334 25395487 ~ 25487425 (-)
G14258 NA other downstream 1126453 25400756 ~ 25404306 (-)
f13a1a.1 LOC108263067 other upstream 168720 26745018 ~ 26757243 (-)
sugct sugct,LOC107687505,LOC107713787 other upstream 869260 27445558 ~ 27553506 (-)
dipk2ab cunh3orf58,dia1b,LOC108272730,LOC107687522,LOC107741829,LOC107739121,LOC107588034 other upstream 2971868 29548166 ~ 29604238 (-)
pcolce2b pcolce2,LOC108272785,LOC107566300,LOC107675309,LOC107588030 other upstream 3221455 29797753 ~ 29814814 (-)
gpr158a gpr158 other upstream 3656025 30232323 ~ 30333220 (-)

Expression


Co-expression Network