LOC117597403 (LOC108273692,LOC108261292,LOC108270747,LOC108261406,LOC108273691,LOC108270753,LOC108257668,LOC108263642)



Basic Information


Item Value
gene id LOC117597403
gene name LOC108273692,LOC108261292,LOC108270747,LOC108261406,LOC108273691,LOC108270753,LOC108257668,LOC108263642
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 34521713 ~ 34542482 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_034304739.1
ATGGGAGGatctgaaaagagaaaaggctCAGTGAAGTCGGGGAAAGCAGTGTCGGATGTGCAGAGCAGCTCGGCTAGTAAAGTTGACGGTAATTTACGAGCAGTGGAATCTCGTGATAATCCTCCTTCAGGCTTTGTACTGAAAGATCATCTGCATGATTATTACGATCAAAATGATGACTCTGAGATGCTGCTGGTGGAGGAGATAATTCCACCGTCTCTCGATACTCCCTGTGATTCTCCGGCCTTTAAACTTAGGAGAACAGATCAGGTAAACACAGCAGTTATTTCTACACAACTCTCCGAGCTCTCGCAGTTGGTGAATAATCGATCGGACGGGATGGAAAAGTTGATTGGAGAAAACTCGCGGGTAATTAAAGATATGAAAGAAGAGATCGGCAAGAACACGGAACGAATCTCTGGAACGATGGAAACGATTGAATTTGTCTGCAATGAGAACTTCGTCTCTGGGTTCCAGCTGAAACTCAAAtccaaactgagagagaaatgtaaaagaattaatgaaggaatctcacagcatggaagctcagcacttctgaatgagatctacacagatctctacatcacagagggtgggagtggagacgtcaataatgaacatgaggtgagacagattgagacagcgtccaggagaccagcaacacaggagacacccatcaaatgtaatgagctctttaaagacaagtccatcagaagagtgctgactaaaggagttgctggaattggaaaaacagtctctgtgcagaagttcattctggactgggccgaaggaaaagcaaatcaggacgtcaccttcatgtttccacttccctttagggagctgaatttgatgaagcagaaaaatcttAGTCTAATGGaacttcttcatcactttttcccagaaataaaagaattacaattaatagactgtaatgttcacaaagtgatattgatctttgatggtctggatgagtgtcgacttcctctaaatttccagaacaatgagagtttgtgtgatgtgacagagtcagcctcagtggatgtgctgctgacaaacctcatcaaggggaatctgcttccctctgctctcctctggataacctctcgaccaggagcagccaatcagatccctcctgagtgtgtagaccaggtaacagaggtacgagggttcagtgatcctcagaaagaggagtacttcaggaagaggatcagtgatcagagcctggccaataaaatcatcacacacatgaagtcttcaagaagcctctacatcatgtgccacatcccagtcttctgctggatttcagccactgttctagagagaatgttgggtgaagcagagagtggagagatccccaagactctgactcaaatgttcacacacttcctgatctttcagatcaaacacaaggaccaaaagtaccatcagaaatgtgaccctgatccacGGAAGACCAGaaagagtatcctggcactgggaaaactggctttccaacagctggagaaaggaaacctgatcttctatgaggaagacctgagagagtgtggcattgatgtcagagaagtgtcagtgtactcaggagtgtgtacccagatcttcagagaggagtttgggcttcacctggggaaggtgttcagctttgtacatctgagtgttcaggagtttctggctgctttatatgaatttctctctttcattaacaaaaagaatgcaacacatcaaacctgGTTTGGTCTTTtaaccaaatcaaacatgtctgatttcctgagaagtgcagtggacaaggccttacagagtgagaatggacacctggacctgttcctccgcttccttctgggtctgtCGCTGGAGTctaatcagactctcttacgagacCTAATGccccagacaggaagcagctctcacatcaaacaggaaacagtcgagtacatcaaggagaagatcagggagaatccatctccagagaaatccatcaatctgttccactgtctgaatgaactgaatgatcattctctagtacAGGAAGTACAGCATTACCTGAAAAGTAAAGATGACAATCGTCTCAGTGGAGtcagactctctcctgctcagtggtcagctctggcatttgtgttgctgaactcagacgagaatctggatgagtttgatttgattaaatatgacagatcagaggaatgtcttctgaggctgctgccagtggtcaaagcatccagaaaagctgtgctgtgtgagtgtagtctcacagaggaaagctgtagagctctgtcctcagttctcagctcaaactcctccagtctgagagaactggacctgagtgcaAATAAACTGAaggactcaggagtgaagctgctctctgctggactggagaatccacactgtacactggagacactgaggctgcaTTCGTGTAATCTCACaggggaaagctgtagagctctgtcctcagttctcagctcaaactcctccagtctgagagaactggacctgagtaacaataacctgcaggattcaggagtgaagctgctctctgctggactggagaatccacactgtacactggagacacttaGGTCAGTTCATCACTTTCAAactgtggatcctgcatttgtgtcatatggctgttttagattaataaaatgttgtctgtcctggagcACAATTTTAATAGCGGAGCAATAACTGCTATACTTttccagattcaaaaataacaagacAATGAAATAGACGTGTAACAATCTGGATTTACTTctggctttcatacacacacttcatgggctgtgaagcattgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattgatctATAAGTGTTGATCTCTCTACAGCCTGGAaggctgcagtattacaggtgaaggttgtgctgctctggtttcagctctgaagtcaaacacctcat

Function


NR:

description
PREDICTED: protein NLRC3-like, partial

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_034304739.1 True 2924 mRNA 0.45 4 34521713 34542482

Neighbor


gene id symbol gene type direction distance location
LOC117597399 LOC108264971,LOC108263642,LOC108264948,LOC108261406,LOC108268379,LOC108270747,LOC108268894,LOC108263117 coding downstream 139231 34375491 ~ 34382482 (-)
LOC117598299 NA coding downstream 161729 34357136 ~ 34359984 (-)
LOC113525220 LOC108264948,LOC108268379,LOC108261406,LOC108257668,LOC108264971,LOC108270753,LOC108273691 coding downstream 344719 34165120 ~ 34176994 (-)
nubp2 nubp2,LOC107677256 coding downstream 496105 34019943 ~ 34025608 (-)
LOC113525322 LOC108272270 coding downstream 674797 33826523 ~ 33846916 (-)
LOC117597404 LOC108270747,LOC108270753,LOC108264948,LOC108263642,LOC108273691,LOC108260129,LOC108257668 coding upstream 5503 34547985 ~ 34573604 (-)
LOC117598291 LOC108270753,LOC108261292,LOC108270747,LOC108261406,LOC108263117,LOC108268379,LOC108268894,LOC108274210 coding upstream 72767 34615249 ~ 34812353 (-)
LOC117598307 NA coding upstream 142948 34685430 ~ 34688115 (-)
LOC117598309 NA coding upstream 277445 34819927 ~ 34820909 (-)
LOC117598340 NA coding upstream 295071 34837553 ~ 34845305 (-)
G19038 NA non-coding downstream 40089 34481022 ~ 34481624 (-)
G19030 NA non-coding downstream 60201 34444087 ~ 34461512 (-)
G19026 LOC108261406,LOC108262233 non-coding downstream 63179 34423369 ~ 34458534 (-)
G19024 NA non-coding downstream 78581 34402411 ~ 34443132 (-)
G19023 NA non-coding downstream 111533 34401703 ~ 34410180 (-)
G19048 NA non-coding upstream 22658 34565140 ~ 34591185 (-)
LOC117598380 LOC108268894,LOC108273545,LOC108264971,LOC108270753,LOC108261292,LOC108273546,LOC108263117 non-coding upstream 49397 34591879 ~ 34594975 (-)
LOC117598365 NA non-coding upstream 57676 34600158 ~ 34601393 (-)
LOC117598381 NA non-coding upstream 90868 34633350 ~ 34635270 (-)
G18943 NA non-coding upstream 100321 34642803 ~ 34648376 (-)
LOC113524641 cox6b1,LOC108270924,LOC108413555,LOC107687105,LOC107556657,LOC107753036,LOC105926733,LOC107667149 other downstream 251407 34266304 ~ 34270306 (-)
G18848 NA other downstream 484380 34015048 ~ 34037333 (-)
dnah3 dnah3,LOC108263105 other downstream 905347 33572753 ~ 33616366 (-)
G18432 NA other downstream 949883 33571379 ~ 33571830 (-)
LOC113523757 LOC108263642,LOC108270747,LOC108268894,LOC108263117,LOC108264948,LOC108268379,LOC108257668,LOC108261292 other downstream 1566010 32899869 ~ 32955703 (-)
LOC117598289 LOC108264971,LOC108263642,LOC108268894,LOC108261292,LOC108273545,LOC108270753,LOC108270747,LOC108263117 other upstream 267437 34809919 ~ 34929610 (-)
G19080 NA other upstream 409594 34952076 ~ 35160443 (-)
LOC117598337 LOC108273219,LOC108261257,LOC108273545,LOC108268260,LOC108268894,LOC108270753,LOC108263642,LOC108273546,LOC108261282,LOC108263117 other upstream 787784 35330266 ~ 35343867 (-)
G19132 LOC108270747,LOC108270753,LOC108273692,LOC108263642,LOC108261406,LOC108257668 other upstream 946754 35489236 ~ 35516236 (-)

Expression



Co-expression Network