ankrd28b (ankrd28,ankrd44,ankrd28b,LOC107685545,LOC107596646,LOC107745379,LOC107550837,LOC107684548)


Basic Information

Item Value
gene id ankrd28b
gene name ankrd28,ankrd44,ankrd28b,LOC107685545,LOC107596646,LOC107745379,LOC107550837,LOC107684548
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 20733426 ~ 20751548 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305925.1
CCCCTCTAAAAGCTATTTTCAACGTTGACCCTGATGAAGTACGGTCCCTCATATTCAAGAAAGAGGATGTAAATGCGCAAGATAATGAGAAAAGGACTCCGCTTCACGCTGCTGCCTACCTAGGAGATGCTGAAATCATAGAGCTCCTGATTTTATCAGGGGCGAGAGTAAATGCCAAAGACAATAAGTGGTTGACTCCTCTGCATCGAGCAGTAGCCTCATGCAGTGAGGAGGCAGTGCAGGTGCTATTGAAGCACTCTGCCGATGTGAACGCACGGGATAAGAACTGGCAGACGCCACTGCACGTAGCCGCAGCTAACAAAGCAGTGCGCTGTGCTGAGGCACTGGTGCCTTTGTTGAGCAATGTGAATGTGTCAGACCGAGCAGGCCGCACAGCGCTGCACCATGCTGCCTTCAGTGGCCATCTTGAGATGGTAAGATTACTGCTGTCCAGAGGAGCGAACATTAATGCGTTTGATAAAAAGGACCGGCGGGCAATCCACTGGGCCGCATACATGGGTCATTTGGAGGTGGTGAAGCTGTTAGTGTCTCATGGTGCTGAGGTGACGTGTAAAGATAAGAAGGCCTATACACCTCTGCATGCAGCAGCCTCTAGTGGGATGATTAGCGTGGTCAAATACCTGTTAGACCTGGGAGTGGATATCAATGAGCCGAATGCATACGGGAACACACCACTGCACGTGGCCTGCTATAATGGGCAGGATGTGGTGGTGAACGAGCTGATAGAATGTGGGGCCAATGTCAACCAGGTGAACGAGAAGGGTTTCGCACCTCTGCACTTCACTGCTGCCTCACGGCACGGTGCACTCTGTCTCGAGCTGCTCGTAGGAAATGGAGCCGACGTCAACATCAAGAGCAAAGATGGGAAAACTCCCTTGCACATGACTGCAATCCATGGGAGGTTCTCTCGTTCGCAAGCAATCATTCAAAATGGTGCTGAGATAGACTGTGAAGATAAAAATGGCAACACACCCCTACATATTGCAGCACGATATGGACATGAGCTCCTCATCAACACGCTCATTACCAACGGAGCAGACACCTCAAAGCGGGGTGTCCATGGCATGTTTCCTCTGCATTTAGCCGCTCTTAGTGGCTTCTCAGACTGCTGCCGTAAACTACTGTCCTCTGgCTTTGATATAGACACTCCTGATGACTTCGGAAGGACCTGTTTACATGCTGCAGCAGCTGGAGGGAATCTGGACTGTCTCAATCTTCTCCTCAATACAGGGGCAGATTTTAACAAGAAAGACAATTTTGGGAGGACGCCATTGCACTATGCAGCTGCAAACTGTAACTATCAGTGCCTATTTGCTATGGTGGGTTCAGGAGCCAGCGTCAATGACCTGGACAAAAGGGGCTGCACTCCCCTGCACTACGCTGCCGCTTCTGACTCTGATGGAAAGTGCCTGGAGTATTTGCTGAGGAACGATGCTAACCCAGGGATCCGAGACAATCAGGGTTATAATGCGGTGCACTACGCATCTGCATATGGACACCGGCTGTGTCTGGAGCTGATTGCAAGCGAAACCCCTTTAGATGTGCTAATGGAGACCTCAGGGACTGACATCCTCAATGATTCTGATGTTCGAGCTCCGGTTAGCCCACTGCATCTCTCTGCATATCACGGGCATCACCAGGCCCTCGAGGTGCTCGTGCAGTCTCTGCTGGATCTAGATGTGAGGACGGCGCAGGGCCACACACCGCTGGACCTGGCTGCTTTTAAAGGCCACGTGGAGTGTGTGGATGTTCTTATCAACCAAGGAGCCTCCATCCTTGTCAAGGACTACACTCACAAACGCACTCCCATCCATGCAGCAGCCACAAACGGCCACTCTGACTGTCTGCGTTTATTGATTGGAAATGCTGACATACAGAGCGCAGTTGACATTCAGGATGGCATTGGGCAGACACCTCTGATGTTGGCTGTGTTGAGTGGTCACACAGACTGCGTGTATTCTTTGCTCAATAAAGGAGCCAATGTAGAAGCCAAAGACAAGTGGGGCCGCACCGCATTACACAGAGGGGCAGTGACGGGGCATGAAGAGTGTGTGGAGGCCTTGCTGCAGCACAATGCCAGTTTCATGGTGCGGGACTGTAGAGGCCGTTCTCCTGTACATTTGGCTGCTGCCTGTGGCCACGTGGGGGTTTTGGGTGGCCTGCTACATGCAGCTCAGTCTTTGGATTCCATCCCTGTCATCACAGACCACCAGGGATACACACCTCTGCATTGGGCCTGTTACAATGGTCATGACACATGTGTTGAAGTGCTGCTGGAACAGGAGCTGTTCCACAAAGCAGAGGGCAACTCCTTCAGCCCACTTCATTGTGCCGTGATAAACGACAATGAGGGAGCAGCAGAAATGTTGATTGACACATTGGGTCCTATGATTGTCAATGTTGCTGACTCTAAAAACAGGACTCCACTCCATGCTGCCGCGTTCACTGatcatgtggagtgtctgcaACTTCTGCTAGCTCACAACGCCCAGGTGAATTGTGTCGACTCTGGTGGCAAAACCCCTCTCATGATGGCTGCTGAAAACGGACAGACAAACGCCGTGGAACTGTTGGTGAGCAGTGCAAAAGCAGACATGACCTTGCAGGATGCCAATAAAAACACTGCACTACACCTGGCCTGCAGTAAGGGACATGAGACCAGTGCCTTGTTGATTTTAGAGAAGATCACGGACAGAAATCTCATCAACTCCACCAACGCAGCTTTACAAACGCCGCTGCACGTGGCTGCCAGAAACGGACTGACGGTTGTGGTACAGGAGCTGCTGGCCAAGGGTGCAAGCGTGCTAGCTGTTGATGAAAATGGTTACACGCCTGCCCTGGCCTGTGCCCCCAATAAAGATGTGGCAGACTGCCTGGCTCTCATCCTAGCCACCATGATGCCTGTGTCTCCCAGCAGTGGCTCTGTGCCCAGCCTGCCATTCAGTACCATCAACCACTACACTAGCCCAGCCAAGAGCGCCACATTCGACAGCTTGCCCATGCTGCGCAGCGGACACAGCTCCTACTGCAGCTTCAACAGCATCGGGCACCACGGCTTCTACAAAGACGACGAGCTCAATGATTCCGACTCGGAGACATactga

Function

symbol description
ankrd28b Orthologous to human ANKRD28 (ankyrin repeat domain 28).
ankrd44 Orthologous to human ANKRD44 (ankyrin repeat domain 44).
ankrd28 Predicted to be located in cytosol and nucleoplasm.

NR:

description
PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A

GO: NA

KEGG:

id description
K15502 ANKRD28; serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305925.1 True 3125 mRNA 0.52 27 20733426 20751548

Neighbor

gene id symbol gene type direction distance location
LOC117598413 LOC108267376 coding downstream 4367 20727452 ~ 20729059 (-)
hacl1 hacl1,LOC107745383,LOC107684560,LOC107743162,LOC107685543 coding downstream 6210 20714462 ~ 20727216 (-)
colq colq coding downstream 19668 20698032 ~ 20713758 (-)
fkbp14 fkbp14,LOC107550815,LOC107596753,LOC107685615,LOC107745381,LOC107743226 coding downstream 52292 20678790 ~ 20681134 (-)
cpvl cpvl,LOC107684544,LOC107745375,LOC107550833,LOC107743225,LOC107685540 coding downstream 106267 20619546 ~ 20627159 (-)
twist1b twist1,LOC108256329,LOC103366955,LOC100712142,LOC107378688,LOC107103781 coding upstream 116823 20868371 ~ 20870748 (-)
LOC113542419 LOC103028094,LOC108440250,LOC108440212,LOC108440210 coding upstream 133519 20885067 ~ 20885871 (-)
macc1 macc1,LOC107728525,LOC107550840,LOC107684550 coding upstream 144821 20896369 ~ 20904246 (-)
sp8b sp8b,sp8,LOC108261619,LOC105906357,LOC101158882 coding upstream 194649 20946197 ~ 20949609 (-)
rapgef5b LOC108267288,LOC107596719,LOC107674937,LOC107743169 coding upstream 305328 21056876 ~ 21105333 (-)
G11523 NA non-coding downstream 56580 20674251 ~ 20676846 (-)
G11349 NA non-coding downstream 210204 20522679 ~ 20523222 (-)
G11277 NA non-coding downstream 282101 20450329 ~ 20451325 (-)
G11243 NA non-coding downstream 320228 20412167 ~ 20413198 (-)
G11119 NA non-coding downstream 631591 20041655 ~ 20101835 (-)
G11545 NA non-coding upstream 45202 20796750 ~ 20799412 (-)
G11569 NA non-coding upstream 93717 20845265 ~ 20845481 (-)
LOC113542610 NA non-coding upstream 114257 20865805 ~ 20866886 (-)
LOC117597063 NA non-coding upstream 119247 20870795 ~ 20879814 (-)
G11806 fhod3,LOC107743170,LOC107662660 non-coding upstream 486487 21238035 ~ 21239276 (-)
G10832 LOC108267614 other downstream 909743 19816477 ~ 19823683 (-)
trnaq-cug_9 NA other downstream 986543 19746526 ~ 19746883 (-)
trnaq-uug NA other downstream 987486 19745650 ~ 19745940 (-)
LOC117597712 NA other downstream 1030266 19702611 ~ 19703160 (-)
trnaq-cug_8 NA other downstream 1033789 19699566 ~ 19699637 (-)
rxrbb rxrbb,LOC108267229,LOC108413045,LOC107596638,LOC107581542 other upstream 512029 21263577 ~ 21275341 (-)
aicda aicda other upstream 1934859 22686407 ~ 22691804 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other upstream 2149803 22901351 ~ 22908140 (-)
LOC113542417 NA other upstream 2368924 23120472 ~ 23129313 (-)
cxcr3.2 LOC108266514 other upstream 2381378 23132926 ~ 23165584 (-)

Expression


Co-expression Network