LOC117598299


Basic Information

Item Value
gene id LOC117598299
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 34357136 ~ 34359984 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308134.1
ACTAGTGACAAATCTAGCGACCTTTTGGACGAACCTTAGCAACTTTCCAAATGTCACCAGTACTGTCCTGCGCGAGCACGAGGTCTTGCTTCCCTGCTGCAGTCACACCCCTCTGTGCGTCTGCTCTGTTCAGTGAGTGGCTGAGAGACGAGCAGCGCATTCCGTTGACCGCACAGCAGCTGACATAGATGTGAATGAACTGCGCATGTGCACGCTGTGTTGCCACAGACCAATCACTTACCAGCTTCTCCtttgtattaaatttgaaaGATTATTGTGACCGTTTATTCTTGTCATGCGCTTATATTACTCACTACCACAGGGCTTTAGTTCATTCCAGTTTTTAATCTCACTGAATTCAGATAGTTTATCTACTATAGCAGAGCACTGCTCCATTCTCTCTTGTGACCACATTGGTAAAGCATGCAAAGCTGCTTTTCCAGATTCCAGTGCAGCCAAACATTTTCGGATGCACCGTACCAAGTGTACTGAAATGATCCATGGGGTGTTGGCACCATATTTCCTTAAAAGATTGGTGGCTGATATTGGTGACAGCAAATACAGCCTCCTTCTTGATGAAAGCACTGATGTAAGTGTCTCAAAGTACCTTGGGATTGTAAGTCGGTATTTTAGTGAGGACAAGGCAAATGTGGTGGCTACCTACCTAGGCCTTGTTGAGCTGGAGGGAGGGGATGCTAGAACAATAGCCAGAGCAGTTCTAGATTTTCTTGGGAAGTGTGGTCTCAAGAGGGAGAACTTGCTTGGCATTGGCACAGATAATGCATCTGTAATGACAGGAGTGTACAATGGTGTGCACAAAATTGTGAGGGAGGAGAGTGACTTAAAACATCTAGTCCTTATCCGCTGTGTGTGTCACTCCCTACAGTTAGCTGTAAGCTCTGCCTCCAAAAACACTCTTCCACGTAGCGTGGAATGTCTTGTTAGAGAAACCTATAATTGGTTCTCTATTTCTCCAAAGCGCAGAGAGGCATACAAGGCCGTCTATCAGACAATAAACTGTGGGGAGAAGCCTTTACTGATAACAAAGGTCTGTGCCACACGCTGGCTTTCCATAGAGCCTGCTGTGTCCAGAATCCTGGATCAGTGGGAGGAgttaaaattgcatttcagTCTCACCATGTTGAGTGAGCACTGTTACATGGCAGATGTTCTACATTCCATGTACAGTGACCCACAGAACCTCCTGtatctcacttttttaaaatctataattAGTGAGGTGCAGTCTGCTGTTAAGGCTTTTGAGGGGGAACAGTCGGATCCGCTCAAGCTGCTTGACTGTTTAACGAGGCTTATAAAGTCTGTCTGCAGCAGAGTCATTAATCCGATGGCAAAAATTGATGTCCTTAAAGAGCCAATAGAGGGACACATTTCTCCCAAACCATACCTTGGCTATATATTTGAGTCCAAGGCAGCACAGCTGAACCTCTCTCCCGAGGAGGAGGACTGTGTGCGAAGAAGGTGTGTGAACTACACCATCTCCTTAGCAAATGAATTGAGAGCAAGGCTCCCAGATAATATGGAGATACTGCAGCACATGTCTTTGTTCAATGTGGGGGAGACACTAAACCACAACAAGAGCCTTACAGACATGGCAAAACTTGCAGACCTGTTAGGATATTGCCCCGCCACAACTGATAAAACTATTAATCAGTGGAGGTCTATTCACCTTCAGAAATGGGAGGAAACAACAAACACTTTGGCATTCTGGGCTGAAGTTAAGAAGTATAGAGCTTCAGCAGGCATAAACCCATATGAAGACTTGGCTTCTGTTGCAGTTTCTGTCCTCTCCCTCCCACACTCAAATGCTGAGGTAGAGAGGCTGTTCAGTCAAATGGGTGTCATTACAAACAAACTCAGGAACCGCATGTCCCTGCAGACCCTCAGCTCTATTCTGTATATTAGATATGGTTTGAGGTTGGCTGGAGATGCATGTTATGAGCACAAACTGCCTGATAAAGTGCTGCAGCTCTTTGGCACTTCAGCTGCCTATTCATTTAAGTCCTGTCCAGGTTCTAGCTCATCCTCTGCATCCAATATCACCCCACAGGAGGAGAGCACTGAGGGTATGGATCTTGTGGATGATGACCAATTCTGTCTCAGCATTCTCATGGAGTGATCTGGAATCAGAATCACAAAAGTTGTTAAatagtgtttttctttcacatacAATGAATTTGCTTTGGTTTTGTGAGGCAGgctgacttaaaaaaaaaaaaaaaatttttaaatctttttcatttcctATGTATGTAATGTTCATTATCTCCGTTCAGTTAAATtatcatattataataatagagTATTTGAGCATAGATTGACTCCATTTTATGACAATTTCAATCTGttgattaaaatgcagttttttagtattcacattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308134.1 True 2402 mRNA 0.43 2 34357136 34359984

Neighbor

gene id symbol gene type direction distance location
LOC113525220 LOC108264948,LOC108268379,LOC108261406,LOC108257668,LOC108264971,LOC108270753,LOC108273691 coding downstream 180142 34165120 ~ 34176994 (-)
nubp2 nubp2,LOC107677256 coding downstream 331528 34019943 ~ 34025608 (-)
LOC113525322 LOC108272270 coding downstream 510220 33826523 ~ 33846916 (-)
LOC117597391 LOC108272270 coding downstream 545771 33772319 ~ 33811365 (-)
nog2 LOC108257885,LOC107734768,LOC107682132 coding downstream 585291 33769615 ~ 33771845 (-)
LOC117597399 LOC108264971,LOC108263642,LOC108264948,LOC108261406,LOC108268379,LOC108270747,LOC108268894,LOC108263117 coding upstream 15507 34375491 ~ 34382482 (-)
LOC117597403 LOC108273692,LOC108261292,LOC108270747,LOC108261406,LOC108273691,LOC108270753,LOC108257668,LOC108263642 coding upstream 161729 34521713 ~ 34542482 (-)
LOC117597404 LOC108270747,LOC108270753,LOC108264948,LOC108263642,LOC108273691,LOC108260129,LOC108257668 coding upstream 188001 34547985 ~ 34573604 (-)
LOC117598291 LOC108270753,LOC108261292,LOC108270747,LOC108261406,LOC108263117,LOC108268379,LOC108268894,LOC108274210 coding upstream 255265 34615249 ~ 34812353 (-)
LOC117598307 NA coding upstream 325446 34685430 ~ 34688115 (-)
G18929 LOC108273545,LOC108273546,LOC108268894,LOC108261633,LOC108263117,LOC108270753 non-coding downstream 5372 34343290 ~ 34351764 (-)
G18987 dcun1d3,zgc:154015,LOC107556658,LOC107558230,LOC107561121,LOC102779002 non-coding downstream 118740 34236237 ~ 34238396 (-)
G18972 NA non-coding downstream 152485 34202074 ~ 34204651 (-)
G18960 NA non-coding downstream 203878 34152488 ~ 34153258 (-)
G18958 NA non-coding downstream 205725 34151193 ~ 34151411 (-)
G18950 NA non-coding upstream 12536 34372520 ~ 34394638 (-)
LOC117598347 NA non-coding upstream 12844 34372828 ~ 34373351 (-)
G18953 NA non-coding upstream 24470 34384454 ~ 34385664 (-)
LOC117598389 LOC108268894,LOC108261257,LOC108273219,LOC108273545,LOC108263642 non-coding upstream 33317 34393301 ~ 34407881 (-)
G19022 NA non-coding upstream 40838 34400822 ~ 34409174 (-)
LOC113524641 cox6b1,LOC108270924,LOC108413555,LOC107687105,LOC107556657,LOC107753036,LOC105926733,LOC107667149 other downstream 86830 34266304 ~ 34270306 (-)
G18848 NA other downstream 319803 34015048 ~ 34037333 (-)
dnah3 dnah3,LOC108263105 other downstream 740770 33572753 ~ 33616366 (-)
G18432 NA other downstream 785306 33571379 ~ 33571830 (-)
LOC113523757 LOC108263642,LOC108270747,LOC108268894,LOC108263117,LOC108264948,LOC108268379,LOC108257668,LOC108261292 other downstream 1401433 32899869 ~ 32955703 (-)
LOC117598289 LOC108264971,LOC108263642,LOC108268894,LOC108261292,LOC108273545,LOC108270753,LOC108270747,LOC108263117 other upstream 449935 34809919 ~ 34929610 (-)
G19080 NA other upstream 592092 34952076 ~ 35160443 (-)
LOC117598337 LOC108273219,LOC108261257,LOC108273545,LOC108268260,LOC108268894,LOC108270753,LOC108263642,LOC108273546,LOC108261282,LOC108263117 other upstream 970282 35330266 ~ 35343867 (-)
G19132 LOC108270747,LOC108270753,LOC108273692,LOC108263642,LOC108261406,LOC108257668 other upstream 1129252 35489236 ~ 35516236 (-)

Expression


Co-expression Network