ino80e (ino80e,LOC107723407,LOC107700176,LOC107551684,LOC107717446)


Basic Information

Item Value
gene id ino80e
gene name ino80e,LOC107723407,LOC107700176,LOC107551684,LOC107717446
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 23856083 ~ 23862923 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308137.1
CATAGATGCACAGATAGACATGAACGGCCAAGCCGAGTTAGATGTGGATTACAAGCGGAAATACAAAAACCTAAAGCGAAAATTAAAATTCTTGGTGTATGAGCAAGAATGTTTTCAAGAGGAGCTGAGAAGAGCACAGAGAAAGCTTCTGAAGGTCTCCAGAGATAAAAGTTTCTTGCTGGACAGATTGTTACAGTATGAGCGGGTGGATGAGGACTCGTCTGACTCGGATGCCACAGCCTCCTCAGACAGCGAGGGAGAGGCTCCaagagaaagggaaagggaaCCAGGAAAGAAGAGGAGAAGTCCCGGAGGTCCGTCCCTCGCTTCATCCTCGTCCCCCCagctttctctcctctctcgcCCCGGAGCGAACGCTCTCCAGTCTTCAGCACCCACTCAGTATCTCAACGCGTTACCCTTCCCTCCTGACTATTTGGCTCCCTCTGCTGAGCGagtgaggaaagagagaaaaccaAAACcaccaaaacagagaaaagagtCTGCAGgaaagGTGGTATCTCCATTAGCATCTAACTACCCAACAGGCAGTGCTCCGGGCGCGGGTTCGTCCGGGCCGTTCAGCTGGGTCCCGCGGCAGATGCTGAGCGGAGACGCCGcagaggaggaaggagagagtgagggagaaagcgatggaggagaggaggagagaggagagggagaggaagcaGAACTGGTCATTGACATTCCTAATGAGTGAAGGTGAAATGGACAAAGACTCTAGTGTTTGTTTAGCATCAGTGAAGGGAAACCTCAAGGAAACGCCATTTATCCAGTTGTGTTTTTGCTATAATTATGCTACAATTGTCTCTTCTCcaccatttttacattttaatagcaACAATCTAACAATTAAATCTACAGTGTATAGGATTTTATTtgggttaaaaatgaaaacaaagtcATTATTGAGTCAGGGGAGGAAAATCTGCCAGAAAATACAGTGTTCCTCCTTGAAAGGCTTGTGATAAGAATTCACACTCAGAGCTCTTGGGTTTCAAATTGGAGGATGCATGTTATACGCCAGCTCAGTTACATCCCACACCATCATCGCTGAAAGTAGTAGAGCCGAAGACCTGACCCCAGATTTCCACTATGACTTTGACAGAGTAGCATAAAAGAGAAGCCTTTCCCCTTAAACTGAGTTTTAGCCAGATAGCTCGTGATATTCGGCCTCATAGTCACATAGAGCTGCTGTAGATGTTGTGGCAGAGACACATCTGTATGTACTGATTCAGGATCAGGTAAATCATGTGTGTCAGAATTATTGTAATGTTAAGAAGAGTTTGCTGACTTGTAATTCAGCATTTATGTAAGCAAACTGCCTGTTATAGAACCTGAGTCTCTTATTACTCAGCAAGGACCTCAGCTGCTTTTTAAAGTGTTCAAATAGTTCTCTGTTAAAATCAACCATCTGGTCATTCTTACTAGATAACATTGTGACTTAAAACATGGTGAATTGTAATCTGACTTTTGTTAACACTGTGACCTTTTTCATTAgctctgtaataaaaaaaaat

Function

symbol description
ino80e Acts upstream of or within brain development. Predicted to be located in nucleus. Predicted to be part of Ino80 complex. Is expressed in brain. Orthologous to human INO80E (INO80 complex subunit E).

NR:

description
PREDICTED: INO80 complex subunit E isoform X2

GO:

id name namespace
GO:0007420 brain development biological_process
GO:0006260 DNA replication biological_process
GO:0006281 DNA repair biological_process
GO:0031011 Ino80 complex cellular_component

KEGG:

id description
K11669 INO80E; INO80 complex subunit E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308137.1 True 1541 mRNA 0.44 9 23856083 23862923

Neighbor

gene id symbol gene type direction distance location
LOC113542255 LOC108266323 coding downstream 2386 23850763 ~ 23853697 (-)
vars1 vars,LOC107700174,LOC107723495,LOC107717441 coding downstream 8717 23827438 ~ 23847366 (-)
si:ch73-22o12.1 LOC108266341,LOC108261109 coding downstream 60967 23731602 ~ 23795116 (-)
atp1a3b atp1a3b,LOC108432319,LOC108266346,LOC107671176,LOC107723432,LOC107582039,LOC107551687 coding downstream 153726 23680292 ~ 23702357 (-)
pou2f2a pou2f2,pou2f2a,LOC107671217,LOC107717432,LOC107582157 coding downstream 221158 23592579 ~ 23634925 (-)
si:dkeyp-77h1.4 LOC108266289 coding upstream 10009 23872932 ~ 23891281 (-)
mdc1 mdc1 coding upstream 28566 23891489 ~ 23909121 (-)
tubb5 tubb,LOC102780606,LOC107700172,LOC107717448,LOC107086735,LOC101486495 coding upstream 50166 23913089 ~ 23918564 (-)
ddr1 ddr1,LOC107551675,LOC107723396 coding upstream 71821 23934744 ~ 23977540 (-)
gnl1 gnl1,LOC107717451,LOC107671206,LOC107551674,LOC107700168,LOC107723463,LOC107582120 coding upstream 128741 23991664 ~ 24001583 (-)
G13424 NA non-coding downstream 40025 23814277 ~ 23816058 (-)
G13369 NA non-coding downstream 328143 23527690 ~ 23527940 (-)
G13361 NA non-coding downstream 349785 23506020 ~ 23506298 (-)
G12917 NA non-coding downstream 724585 23131275 ~ 23131498 (-)
G12819 NA non-coding downstream 917287 22938226 ~ 22938796 (-)
G13438 NA non-coding upstream 48156 23911079 ~ 23912280 (-)
G13452 NA non-coding upstream 158607 24021530 ~ 24021918 (-)
G13465 LOC108266188 non-coding upstream 179331 24042254 ~ 24042606 (-)
G13467 NA non-coding upstream 180521 24043444 ~ 24043657 (-)
G13468 NA non-coding upstream 185180 24048103 ~ 24049660 (-)
dedd1 dedd2 other downstream 181604 23659523 ~ 23674479 (-)
cicb cic,LOC107582035 other downstream 328760 23477158 ~ 23527323 (-)
cxcr3.2 LOC108266514 other downstream 690499 23132926 ~ 23165584 (-)
LOC113542417 NA other downstream 726770 23120472 ~ 23129313 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other downstream 947943 22901351 ~ 22908140 (-)
LOC113542286 riiad1 other upstream 279676 24142599 ~ 24149267 (-)
LOC117596842 NA other upstream 373369 24236292 ~ 24240079 (-)
si:dkey-92i15.4 LOC108265956,LOC108429986 other upstream 528607 24391530 ~ 24404530 (-)
si:ch211-105c13.3 LOC108265907 other upstream 672937 24535860 ~ 24546841 (-)
LOC113542209 LOC108265814 other upstream 689375 24552298 ~ 24561375 (-)

Expression


Co-expression Network