LOC117598307


Basic Information

Item Value
gene id LOC117598307
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 34685430 ~ 34688115 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308195.1
TCAAAAGGAGAAGATGGTGCTGGAgttttgtgcaggtgtttaacTGGAGTTTCTCAGCAGACCATTGATTGAAATGACCTGTGTACAGTTCACACCTCTGTGGTGTTCAAATGCCGAGCAAAACACAGGGCTTGATGACTCTTCCACGCATGCGCAGAAGGACACTTCCGGCCTTACGGACGTTACCGcgcgatttttatttttacttgtctgGAGTCATCCGACATTACGCTTAAAGGAAAGAGCCAAAGCAACACAAGTAGGGGAGAGTCAACTGGAAGAACTTGTTGAAAAACTGGATGCCCAGACCATGGATGTAATTTCACACAGGAGGTCTACTGTTCTTCATGGTCTTCCCTTGTACATGAGAGAGACAGCTTCAATTTCAAACACCATTCTGGACACTGATGCATTGGGGCTGTGCACAAAGGGCATGAAAATGGGAATCCttgaagtggtaaatgactGCACTGCTCACTCAGGATCAAATTCCACGGTGGTCAATGTGGCAGTAGTATTGGAAGAGGAAGTAGTTATGGACAATCTGGGAGACTCCATAAAAGCCTTCATTCTCCTCTTTGGTCTGCTTTATGCTCTTAACATAGAGTATCCCAAGGACTTAAGGTACACCTTTGAAGCCGTCCAGAAAATCTTTGTGAACCTTGGAAGTGAGTGCACTGCAAGAGTGCAGTCTCTAAAGAACAAATTattgcagctgtaatttaaacattttcatgccaGAGATTATTTTTGGCAATACTGCAGTTGGAAACAGATGTCTGAcaattattagaattttttgGCAGAGTTGCTGAACAGCATGGTTGAACTTTCACACCAGATGTTTGACAGACTTGAATTTTTCTTAGAATTGTTGAATTTGGTTTTACATGGTTGAACTTTTGCACAAGATGTTTCAGAAATCTGtccatttaaatgaacagaaatcatttgattaatcctttattttaatgtcttttaaacGGTACTGTAAGGAACCAAATTTCTTTTGATCTAAAGCAAAGGCATTTGATTTTGAAGTGAACCTGTAAGACCTTTAGATGGAGAAGTGAAATTAGTAAGCTTTGTAAATCAGAGTTCTCATGCACTTTTTTGCAGTAAAAACCAGTTTGCTCTAGGTGAtattattgcacagtctggtacTAAAATGCAATaatgatatatttcatttactttaacatGCACAGTGTGCACATattctgttttaaattgttctttTGTACACAGAACGTCCAGTTCAAATCAggatgctgtaaaataaatgtatgtaaaatatacatacagaattttctaactcCACCACACCCAAACACTTATTTGGTAACAGTGTAGGTGATTCcacttacagaaataaagaaatgaagtcTTCATGTTCTGCCTCCTATATGGACTCAGAGCCATTTACTgttcattgtgtaaaatgttaaaagaaagcagattatttatggCTCATTAGTTATGTATGACCTACAACCTTTGTGGGAAATAAGTTCACCGTGTTTGTTGTTGCCATGACGCCTCACActgtacattgtttttgttggagCAAAGCCTGTAGGTTTATTCATAGCAATGAGTTTAAATACTGCTAATTAATACTTACCATGCTAATTGATATTTCaagtctaaaaacacacacagtatcatagaaacttgactgcactgtgctagctagcttaaagtCTATCTCTagcagttattttttaatattttttaatatttttatatgtatttattcaacattatgcTAATGATGACACATTCTTTGTAGATTCTCTGTAATAATCCTTGAGGGTTATTATGTTCTATAATACTGACTATACAGTGTGCTgtgttgaggaggtaaatatacatcactcatcagagttagctggctagcttattgctaacaaaagatgaacatggaggtgtgcatgttttttccaggCCAAAATGACACTTACCATTCAAGttaagtcaaacacagcactatattacagcatggatacagactcaggtgcaaac

Function

GO: NA

KEGG:

id description
ko05165 Human papillomavirus infection

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308195.1 True 2025 mRNA 0.37 4 34685430 34688115

Neighbor

gene id symbol gene type direction distance location
LOC117597404 LOC108270747,LOC108270753,LOC108264948,LOC108263642,LOC108273691,LOC108260129,LOC108257668 coding downstream 111826 34547985 ~ 34573604 (-)
LOC117597403 LOC108273692,LOC108261292,LOC108270747,LOC108261406,LOC108273691,LOC108270753,LOC108257668,LOC108263642 coding downstream 142948 34521713 ~ 34542482 (-)
LOC117597399 LOC108264971,LOC108263642,LOC108264948,LOC108261406,LOC108268379,LOC108270747,LOC108268894,LOC108263117 coding downstream 302948 34375491 ~ 34382482 (-)
LOC117598299 NA coding downstream 325446 34357136 ~ 34359984 (-)
LOC113525220 LOC108264948,LOC108268379,LOC108261406,LOC108257668,LOC108264971,LOC108270753,LOC108273691 coding downstream 508436 34165120 ~ 34176994 (-)
LOC117598309 NA coding upstream 131812 34819927 ~ 34820909 (-)
LOC117598340 NA coding upstream 149438 34837553 ~ 34845305 (-)
LOC113527256 NA coding upstream 249693 34937808 ~ 34943835 (-)
LOC117597410 LOC108263642,LOC108261292,LOC108270747,LOC108270753,LOC108273691,LOC108264948,LOC108257668,LOC108268379 coding upstream 466363 35154478 ~ 35210846 (-)
LOC117598298 LOC108268894,LOC108261292,LOC108263117,LOC108270747,LOC108274210 coding upstream 547156 35235271 ~ 35239484 (-)
G19053 NA non-coding downstream 20078 34661678 ~ 34665352 (-)
G19054 NA non-coding downstream 33489 34643454 ~ 34651941 (-)
G18943 NA non-coding downstream 37054 34642803 ~ 34648376 (-)
LOC117598381 NA non-coding downstream 50160 34633350 ~ 34635270 (-)
LOC117598365 NA non-coding downstream 84037 34600158 ~ 34601393 (-)
G18909 LOC108268894,LOC108261257,LOC108273545,LOC108273219 non-coding upstream 27759 34715874 ~ 34716739 (-)
G19060 NA non-coding upstream 75861 34763976 ~ 34769174 (-)
G19068 NA non-coding upstream 101528 34789643 ~ 34794002 (-)
G18937 LOC108268894,LOC108261257,LOC108263642,LOC108273545,LOC108273219 non-coding upstream 168335 34856450 ~ 34857134 (-)
G19074 NA non-coding upstream 185989 34874104 ~ 34877434 (-)
LOC117597397 LOC108274210,LOC108270753,LOC108261292,LOC108270747,LOC108257668,LOC108263642,LOC108273219,LOC108264971 other downstream 43445 34288562 ~ 34641985 (-)
LOC113524641 cox6b1,LOC108270924,LOC108413555,LOC107687105,LOC107556657,LOC107753036,LOC105926733,LOC107667149 other downstream 415124 34266304 ~ 34270306 (-)
G18848 NA other downstream 648097 34015048 ~ 34037333 (-)
dnah3 dnah3,LOC108263105 other downstream 1069064 33572753 ~ 33616366 (-)
G18432 NA other downstream 1113600 33571379 ~ 33571830 (-)
LOC117598289 LOC108264971,LOC108263642,LOC108268894,LOC108261292,LOC108273545,LOC108270753,LOC108270747,LOC108263117 other upstream 121804 34809919 ~ 34929610 (-)
G19080 NA other upstream 263961 34952076 ~ 35160443 (-)
LOC117598337 LOC108273219,LOC108261257,LOC108273545,LOC108268260,LOC108268894,LOC108270753,LOC108263642,LOC108273546,LOC108261282,LOC108263117 other upstream 642151 35330266 ~ 35343867 (-)
G19132 LOC108270747,LOC108270753,LOC108273692,LOC108263642,LOC108261406,LOC108257668 other upstream 801121 35489236 ~ 35516236 (-)

Expression


Co-expression Network