LOC117598340


Basic Information

Item Value
gene id LOC117598340
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 34837553 ~ 34845305 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308337.1
GCGCTTGCTGATGCTGCTCTGTGCGCTCAGGTCAGCCGTCCTCACACTCTCTATTAATGGAGCCATTTGAACACCACAGAGGTGTGAACTCTACACAGCAGAATATCCAGTGTTGTTTAGTGTTGTTTTTATGCTGTTCATTTTGGTGGGGTTAATGTAATTACAGCGAGTTGACGTGATTGACACTAGTGAGGAGTTGATCCAATTTCCGGTCCTTGCCCCTGATTTCCTCTTTGTGTAATGGCGGATGACCACGAGGAGAGGACGGCGTTCAAACAgttaaacacaaatttggGCTTGCAAGAACTGCAGCTCTTCAAGTCTCTTCAAGTCTTAGACACAGACACcacggaggaggaggaggaggaggagaaggaggagatcTTCCATGAACTGATTGAAGGCAGTCCACAATTATGCCTAACTGTAAGATGTtcagaagaaaatatttttgctggCTTGTCTGACGAGTTTTCACCTGCAAGATCTTCAACCCCCAGCACAAGCACTGATACTCTTTCACTCCCTTCTACTGACTGTGAAGAGACTGAGAGAGCAGTCCAGAATCAAGCAGCAAGGGCCAGCAACAGTTTTGGCATAGATGCTGAAAAGGCAAGACGAATTGTCCAAGATGCCCTGGAAAAACAATCTGGCGGTGAAGATGCGCTTGAAGAACACCAGACAACTAAAACTTTAAAGCACAGCACCAGACGTCAGCTTGTTAATATTGTTGTCAGTCACATGACAGAGATTCATGGGAGGATCCCTACACGCAAACAGCGGGAGACTTATGCCTTGGGCATCGTTTCTCTCTTTCCTAGCCTGAGAGACCCTTTTTCCACAAAAGGCTATATAAATCAGGACTTTGCTCTGCTGTTCAATTCTGAAACATCCAACAAGTTGCTTGAGAGGGGGGAGACTGCATTTAAGCAGAAGATAATCAATGAAGGCCAATCTCTTACTTCAACAGCAGAAATTCAGAGTCTTATCAGTGCAGCAGAGGGACAAGGATCTGAACATGGGAAGAAGAAGACTAAGATCTGCTCGACAGAGGCTGTTGAGAGACTTGTGAATTTCCATAAGTCCTGCACCAGTATTGAAGGCCTTATCAGTGGGAGGGAGAGTCACCAGCCATACCTACGGGCATCTGGAAGACTCAAGAGCAAGATTGACAAATTCTATGTGGTTGTGGACAAGCACCTCATCCCTTGTGCAGGAACCAGCTCTTTGAGTGCTGTCGATGAGCTCTTCAAAGTTCACTATGTGTTCAACCTGTCATATGAGGGAGCTCTTGTCAATGTCTTCACCTTCCTGCAGACCACAATCTACAACATTGATATTGGTCTTACCAGTGAGTCTCTCCGCGTCAAGGAATTGCGTGCAAAACTGTTAAACTAGTTTAATGTTGAAGTGTTTCCGCTGTCAAAGTTTGCACTCAAACAGCCACTCTTTGATCTCTCATTTAAGACTCACACACAGTTTCTATCCTTTGTTGAAGTTCAAGTTGTTATGTGCACAGAGTGGCTGTAGTCGGCAGTTTTATACATATTCTGGTTTTCGAAAGCATTTGAACAGTGCTCATGTTACTGAATCCAGTCCAGTTCTTGATTTGCCATCTGGTGAAGTGTTAACTCCCAGTGTTAATCAGTCAGGTTCTTTGTTTGTTGGAGAAAGTGATCCCCAAGTCGCTCTCGTTGAAAATGTGACCCTCTCTAGAGGAGAGATGGCAGATATATGTGCCTCAATAGTGGCCAAATTACAGAGCAGTGGAGTAGCCAGTAACTTGGTGTCATCGGTCATTTCGGAGCTTGAGGACCTTATCACAGAAATTCATAACCAAATTCGCCAAAATGTGATGTCTGTCATTCCTCTTGATAACCCAGTCAGATCAGCAGTTGAAGATAGTTTAGGTCATTTTAAGAGTCCCTTTTCTATGTTTAacagtgaaacaaaaagaaGTAATTATTTTGTTAACAAATGGGCTGTAGTTGAGCCTGTCGAAATTATTCTTGGCATGAGATACGACACTaggagaaacaaacaaacaggatgTTATGATCAGGTACCAGTAAAAGAAACATTCGTTTTTGTCCCAATTTTGGAATCATTAAAATTTATGTGTTGAAATGTAGATGTATGTACACTGCTGAAAGACTTTACAGGAAAgcagaaatcacattttgagGACTTCTGTGATGGAAGTTACTTCCAAAGTCATCCATTATTCTCTAAACATCCCAGTGCTTTACAAATTCAGGTATACTTCGATGAATTTGAAACCGCAAACCCTCTTGGCTCTAAACACGGGGTACACAAAGTTGGTGCTCTGTATTTTGTGCTTCGGGGTCTACCTCCAAAATTTAATTCAAGACTGATGAATATCCATTTGATAGCGTTATTTCATGCACAAGATGTGAAAAAGTATGGGTTTGACCCCATTTTGGAACCACTGATTGGCGACATCAAGATTCTAGAAACAGATGGTATTGAACTACCCTTTTCCACAGATAGAGTTTATGGCACAATATGTCAGGTAACTGGAGACAACTTGGGGATGCATTCAATCCTTGGATTCACAGAATCATTCAGTGGCCATTACTTCTGTCGTCTCTGTTTGACTGACAAAGTTGATGTCCAGTCTGTTTACAGTGAGGATGATTTTAGAGTTATTTTACGCGATCGGACAATTTATGAACAGCAGTGCAGTGAGTTGGAATCTGACCCTCAACTCAAGTCAAGACACGGCCTCAAAAGAAGCTCAACGTTCAATAGTCTGCAATATTTTCATGTGTGCCACAACTACTCTCTAGATGTGATGCACGACCTCCTGGAAGGAGTTGTccaatttgaaatgaaactatTGTTCGAGTATCTTTCAGAAAATTTTGTTACACAGAGTGAATTGCTCTCCAGAATATATTCATATGATTATGGATATTTAGAGAGAAAAACCGCCCTACAAAGGTGAATTTGGAGCACAGTGGAAATAGCATAGGACCCAACTCTATCCAGGCACTCTGTCTAATCAAAAACATTCCATTACTGTTTGGTGATATTGTACCCCTAGGAGATAAAAAGTGGCATTTGCTTCTTCTCTTACTTCAAATTCTTAACCTGGTGTTTTCCCCATGTATTTCTAAAGGTATGACTGTCCACTTGAAACATCTAATAATTGAGCATCATGAATTATTTAAGGAATTGTACCCACACAAAAACTTGCTGCCCAAACATCATTTCATGGTCCATTATGCTGCCTGTATTCGCAAAATTGGTCCGTTGGTGCACATGTGGAGCATGAGGTTTGAGGCGAAGCATAAGGTTTTTAAAGAATACactaaaaaatttcaaaaacattaCCAAATCTCTAGCAAAAAGTCATCAGATGTCATTAGGCTATCTTTGGGAAACAACACCATTGAGTCAAGTGGAGTGTGGACCAATGAAAACATTCTGTTGGGATGATGTGAATGATGGTGAAAAGTTGTCAGGAATGCTACAGAATCCCATACAGTCAAGCATGCATTCCATGAACTGGGTGAAAATAGATGGGACAGAATACAGACAAGACCTGATTGTATGCAGTGAAATTGAGGATAAAATTCCTGTTTTCAGTCAGATTCGGAAAATACTTTTAATTGACAGCactgtgtattttattcttaacaAACTTTTGACAGAACAATTTTCAGAGCATCACCATGCATTTAAAGTACAGAAATACTGTGAATTGAGTGAACTTGTCACAGCAACCAGTTTGAGGTTCTACAGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308337.1 True 3770 mRNA 0.41 8 34837553 34845305

Neighbor

gene id symbol gene type direction distance location
LOC117598309 NA coding downstream 16644 34819927 ~ 34820909 (-)
LOC117598291 LOC108270753,LOC108261292,LOC108270747,LOC108261406,LOC108263117,LOC108268379,LOC108268894,LOC108274210 coding downstream 25200 34615249 ~ 34812353 (-)
LOC117598307 NA coding downstream 149438 34685430 ~ 34688115 (-)
LOC117597404 LOC108270747,LOC108270753,LOC108264948,LOC108263642,LOC108273691,LOC108260129,LOC108257668 coding downstream 263949 34547985 ~ 34573604 (-)
LOC117597403 LOC108273692,LOC108261292,LOC108270747,LOC108261406,LOC108273691,LOC108270753,LOC108257668,LOC108263642 coding downstream 295071 34521713 ~ 34542482 (-)
LOC113527256 NA coding upstream 92503 34937808 ~ 34943835 (-)
LOC117597410 LOC108263642,LOC108261292,LOC108270747,LOC108270753,LOC108273691,LOC108264948,LOC108257668,LOC108268379 coding upstream 309173 35154478 ~ 35210846 (-)
LOC117598298 LOC108268894,LOC108261292,LOC108263117,LOC108270747,LOC108274210 coding upstream 389966 35235271 ~ 35239484 (-)
LOC117597413 LOC108270747,LOC108273692,LOC108263642,LOC108274210,LOC108273544,LOC108264948,LOC108261406 coding upstream 526006 35371311 ~ 35380403 (-)
LOC117597414 LOC108270747,LOC108263642,LOC108273692,LOC108261406,LOC108270753,LOC108257668 coding upstream 545769 35391074 ~ 35394421 (-)
G19068 NA non-coding downstream 43551 34789643 ~ 34794002 (-)
G19060 NA non-coding downstream 68379 34763976 ~ 34769174 (-)
G19058 NA non-coding downstream 74732 34680024 ~ 34762821 (-)
G18909 LOC108268894,LOC108261257,LOC108273545,LOC108273219 non-coding downstream 120814 34715874 ~ 34716739 (-)
G19053 NA non-coding downstream 172201 34661678 ~ 34665352 (-)
G18937 LOC108268894,LOC108261257,LOC108263642,LOC108273545,LOC108273219 non-coding upstream 11145 34856450 ~ 34857134 (-)
G19074 NA non-coding upstream 28799 34874104 ~ 34877434 (-)
G18934 LOC108273691,LOC108268894,LOC108273546,LOC108263117,LOC108273545,LOC108261633,LOC108270753 non-coding upstream 36807 34882112 ~ 34891989 (-)
G18921 LOC108261633,LOC108273545,LOC108270753,LOC108261292,LOC108412218 non-coding upstream 102854 34948159 ~ 34958333 (-)
G19095 NA non-coding upstream 221655 35066960 ~ 35072464 (-)
LOC117597397 LOC108274210,LOC108270753,LOC108261292,LOC108270747,LOC108257668,LOC108263642,LOC108273219,LOC108264971 other downstream 195568 34288562 ~ 34641985 (-)
LOC113524641 cox6b1,LOC108270924,LOC108413555,LOC107687105,LOC107556657,LOC107753036,LOC105926733,LOC107667149 other downstream 567247 34266304 ~ 34270306 (-)
G18848 NA other downstream 800220 34015048 ~ 34037333 (-)
dnah3 dnah3,LOC108263105 other downstream 1221187 33572753 ~ 33616366 (-)
G18432 NA other downstream 1265723 33571379 ~ 33571830 (-)
G19080 NA other upstream 106771 34952076 ~ 35160443 (-)
LOC117598337 LOC108273219,LOC108261257,LOC108273545,LOC108268260,LOC108268894,LOC108270753,LOC108263642,LOC108273546,LOC108261282,LOC108263117 other upstream 484961 35330266 ~ 35343867 (-)
G19132 LOC108270747,LOC108270753,LOC108273692,LOC108263642,LOC108261406,LOC108257668 other upstream 643931 35489236 ~ 35516236 (-)

Expression


Co-expression Network