LOC117598413 (LOC108267376)


Basic Information

Item Value
gene id LOC117598413
gene name LOC108267376
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 20727452 ~ 20729059 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308803.1
GAGGGatgagaagagaaacagaggaaaTTCACCTGCGATTTAACTCTGAAGACTAATATTAGATAAAGATGTTGACTGTATTGGTTTTAGCAGCATTGATCATGGTCTCAGTTGAATCGGACCCCTCGAGCACAGAAGAATGGAAATCTCTGAGCAATCCAAAAAGCAGAATGCTGTTTTTCCAGATTCTACAGTCGTATCTTGATGGTCGAGAAGGTCAAGCTGAAGGCAGAAAAATACATATGGTGGAAGATGGGGACAGCAACCTGGCAAATACTGCACTGGACAAATACAGCAACTTTCTCTACAATAGCATTTTTGATGCTGAATAACAGTACATCAAATGTCATATTATTATATCTGTAATTACcagatatattaaatattatccTGTGTTGTTTCATTTAGTTAAAGAATAGACACCTTATAAATCATATAGCCACTTAAATACCAGTGTCATAATTATTTCCAATGTATTCACATAGCTGTAAATTTCTTACATATTACAGTTATAATTAAAGAGGGTTAgatgtctctttcttttcaac

Function

NR:

description
PREDICTED: uncharacterized protein C2orf66-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308803.1 True 548 mRNA 0.35 3 20727452 20729059

Neighbor

gene id symbol gene type direction distance location
hacl1 hacl1,LOC107745383,LOC107684560,LOC107743162,LOC107685543 coding downstream 236 20714462 ~ 20727216 (-)
colq colq coding downstream 13694 20698032 ~ 20713758 (-)
fkbp14 fkbp14,LOC107550815,LOC107596753,LOC107685615,LOC107745381,LOC107743226 coding downstream 46318 20678790 ~ 20681134 (-)
cpvl cpvl,LOC107684544,LOC107745375,LOC107550833,LOC107743225,LOC107685540 coding downstream 100293 20619546 ~ 20627159 (-)
jazf1b jazf1,LOC108441515,LOC107684540,LOC107550831 coding downstream 178566 20531805 ~ 20548886 (-)
ankrd28b ankrd28,ankrd44,ankrd28b,LOC107685545,LOC107596646,LOC107745379,LOC107550837,LOC107684548 coding upstream 4367 20733426 ~ 20751548 (-)
twist1b twist1,LOC108256329,LOC103366955,LOC100712142,LOC107378688,LOC107103781 coding upstream 139312 20868371 ~ 20870748 (-)
LOC113542419 LOC103028094,LOC108440250,LOC108440212,LOC108440210 coding upstream 156008 20885067 ~ 20885871 (-)
macc1 macc1,LOC107728525,LOC107550840,LOC107684550 coding upstream 167310 20896369 ~ 20904246 (-)
sp8b sp8b,sp8,LOC108261619,LOC105906357,LOC101158882 coding upstream 217138 20946197 ~ 20949609 (-)
G11523 NA non-coding downstream 50606 20674251 ~ 20676846 (-)
G11349 NA non-coding downstream 204230 20522679 ~ 20523222 (-)
G11277 NA non-coding downstream 276127 20450329 ~ 20451325 (-)
G11243 NA non-coding downstream 314254 20412167 ~ 20413198 (-)
G11119 NA non-coding downstream 625617 20041655 ~ 20101835 (-)
G11545 NA non-coding upstream 67691 20796750 ~ 20799412 (-)
G11569 NA non-coding upstream 116206 20845265 ~ 20845481 (-)
LOC113542610 NA non-coding upstream 136746 20865805 ~ 20866886 (-)
LOC117597063 NA non-coding upstream 141736 20870795 ~ 20879814 (-)
G11806 fhod3,LOC107743170,LOC107662660 non-coding upstream 508976 21238035 ~ 21239276 (-)
G10832 LOC108267614 other downstream 903769 19816477 ~ 19823683 (-)
trnaq-cug_9 NA other downstream 980569 19746526 ~ 19746883 (-)
trnaq-uug NA other downstream 981512 19745650 ~ 19745940 (-)
LOC117597712 NA other downstream 1024292 19702611 ~ 19703160 (-)
trnaq-cug_8 NA other downstream 1027815 19699566 ~ 19699637 (-)
rxrbb rxrbb,LOC108267229,LOC108413045,LOC107596638,LOC107581542 other upstream 534518 21263577 ~ 21275341 (-)
aicda aicda other upstream 1957348 22686407 ~ 22691804 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other upstream 2172292 22901351 ~ 22908140 (-)
LOC113542417 NA other upstream 2391413 23120472 ~ 23129313 (-)
cxcr3.2 LOC108266514 other upstream 2403867 23132926 ~ 23165584 (-)

Expression


Co-expression Network