nubp2 (nubp2,LOC107677256)


Basic Information

Item Value
gene id nubp2
gene name nubp2,LOC107677256
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 34019943 ~ 34025608 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034311355.1
caACCACATGAAGAGCGCGAGGAAGAAACCGGTCCggaatcaaccaatcacacgCTGCTTTAGCTGTTACGTCACATGGTTGCGGAAGTGATGGAGGTAAACGGTGacAGGGGGAATCTGGAGAAGGTGGGCCATGTGGTGCTGGTTCTGTCGGGTAAAGGGGGCGTTGGGAAGAGCACCATCACCACGGAGTTAGCGCTCGCTCTGTTACACGCAGGGAAGAAGgtgggcGTGCTGGATGTGGACCTCTGTGGGCCGAGTATCCCCCGCATGCTGGGGGTGAGTCATCGCGAGGTCCACCAGTGCGACGCCGGCTGGGTCCCCGTGTGCGTGGGCCGTCTGTCCCTCATGTCCATCGCCTTCCTGCTGGACGACCCCGACGACGCCATCGTCTGGAGAGGACCCAAAAAGACCgctctgattggtcagtttgtGAGTGACGTGGCGTGGGGGGAGCTGGACGTGTTGCTGGTGGACACGCCCCCCGGGACGTCCGACGAGCACCTGGCCGTCCTGGAGAACCTGAAGAAACACCGAGTGGATGGAGCCATACTGGTCACCACGCCACAggcggtATCTACGGGAGACGTGCGGCGTGAGATCACCTTCTGTAAGAAGACGGGCGTGAAGATTTTGGGCATAGTGGAGAACATGAGCGGCTTCGTGTGTCCTCACTGCactgagtgcaCCAGTATCTTCTctaaaggaggaggagaggaactCGCCAAGCTCACTGGGTCAAAGTTCCTGGgctcaGTGCCGCTGGACCCTCTCCTGAGTGCGAGTGTGGAGGAAGGTCGTGATTTCCTGCAGGCGTTTCCGGAGAGCGCCACCTACAGCTCCATCAGAGACATCGCAGATACACTGCTGACCAGCCTGGAGCACTGACAcccttcatcatcttcatcatcatcatcatcttcatcttcatcatcaccgTAGTGACAGAGCAGCGTACAGGAGCAGGACTGTGGAAACACtgattctaacacacacacacacacacaccacagcgttaaagtgtgtgtgagttacaAACATGACAAACATCAGCTCTCATCTTGTATACCTGCTGAGTGTAAagtccactcacacacacacacacacacacacacacacacacactcagtttcTGTCATATCTGTGTTTGTAGCATGGTGCGGAATGTGTGTGATCTTACTGTGTATAAAGACACAGTTATAATAAAGGAccagcagaagtgtgtgttttacgtG

Function

symbol description
nubp2 Predicted to enable iron-sulfur cluster binding activity. Predicted to be involved in iron-sulfur cluster assembly. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human NUBP2 (nucleotide binding protein 2).

NR:

description
cytosolic Fe-S cluster assembly factor NUBP2

GO:

id name namespace
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034311355.1 True 1235 mRNA 0.55 7 34019943 34025608

Neighbor

gene id symbol gene type direction distance location
LOC113525322 LOC108272270 coding downstream 173027 33826523 ~ 33846916 (-)
LOC117597391 LOC108272270 coding downstream 208578 33772319 ~ 33811365 (-)
nog2 LOC108257885,LOC107734768,LOC107682132 coding downstream 248098 33769615 ~ 33771845 (-)
ntn2 LOC108274409 coding downstream 273707 33720816 ~ 33746236 (-)
kcnj12a kcnj12a,LOC108268745,LOC108413805 coding downstream 376700 33630038 ~ 33643243 (-)
LOC113525220 LOC108264948,LOC108268379,LOC108261406,LOC108257668,LOC108264971,LOC108270753,LOC108273691 coding upstream 139512 34165120 ~ 34176994 (-)
LOC117598299 NA coding upstream 331528 34357136 ~ 34359984 (-)
LOC117597399 LOC108264971,LOC108263642,LOC108264948,LOC108261406,LOC108268379,LOC108270747,LOC108268894,LOC108263117 coding upstream 349883 34375491 ~ 34382482 (-)
LOC117597403 LOC108273692,LOC108261292,LOC108270747,LOC108261406,LOC108273691,LOC108270753,LOC108257668,LOC108263642 coding upstream 496105 34521713 ~ 34542482 (-)
LOC117597404 LOC108270747,LOC108270753,LOC108264948,LOC108263642,LOC108273691,LOC108260129,LOC108257668 coding upstream 522377 34547985 ~ 34573604 (-)
G18847 NA non-coding downstream 7914 34011770 ~ 34012029 (-)
G18846 tbc1d24 non-coding downstream 14183 34003027 ~ 34005760 (-)
G18799 NA non-coding downstream 67097 33862202 ~ 33952846 (-)
G18796 NA non-coding downstream 159533 33859938 ~ 33860410 (-)
G18794 NA non-coding downstream 161777 33857708 ~ 33858166 (-)
G18853 NA non-coding upstream 1292 34026900 ~ 34029893 (-)
G18857 NA non-coding upstream 13953 34039561 ~ 34040640 (-)
G18859 NA non-coding upstream 16348 34041956 ~ 34044679 (-)
G18869 NA non-coding upstream 42300 34067908 ~ 34068971 (-)
G18870 NA non-coding upstream 43209 34068817 ~ 34069586 (-)
dnah3 dnah3,LOC108263105 other downstream 403577 33572753 ~ 33616366 (-)
G18432 NA other downstream 448113 33571379 ~ 33571830 (-)
LOC113523757 LOC108263642,LOC108270747,LOC108268894,LOC108263117,LOC108264948,LOC108268379,LOC108257668,LOC108261292 other downstream 1064240 32899869 ~ 32955703 (-)
G18097 ift140 other downstream 1423138 32589902 ~ 32596805 (-)
G17630 LOC108267341 other downstream 1967389 32000625 ~ 32052554 (-)
LOC113524641 cox6b1,LOC108270924,LOC108413555,LOC107687105,LOC107556657,LOC107753036,LOC105926733,LOC107667149 other upstream 240696 34266304 ~ 34270306 (-)
G19006 LOC108270747,LOC108273692,LOC108263642,LOC108270753,LOC108273544,LOC108261406,LOC108264948 other upstream 258458 34284066 ~ 34998396 (-)
LOC117597397 LOC108274210,LOC108270753,LOC108261292,LOC108270747,LOC108257668,LOC108263642,LOC108273219,LOC108264971 other upstream 262954 34288562 ~ 34641985 (-)
LOC117598289 LOC108264971,LOC108263642,LOC108268894,LOC108261292,LOC108273545,LOC108270753,LOC108270747,LOC108263117 other upstream 784311 34809919 ~ 34929610 (-)
G19080 NA other upstream 926468 34952076 ~ 35160443 (-)

Expression


Co-expression Network