LOC113542638


Basic Information

Item Value
gene id LOC113542638
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 21934683 ~ 21937785 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404323.2
ACATTCCCAGTGAAGTCTGGTAGCTCTATTTTGCTCTGCACTGAACTGACATAAcggtcacttttttttaaaacacttttgttGTTTTCCATAAATGGTCATTGTCTCTTCAGCGTGGTGGAAACAGTAGATGGGAACTCTGTTCAGAAGAGTTCTGTAACTCTTTAGTTTCAGAAAGGGTTGTGAAACCTCTGCAAACATGTGCCTTGTGCAGTATCCTACAACTTCTAGAGTCTTACTGATGTATGTATTTCCACGGTTTGGTTATAATTATGGCTAGAGCTGTTGTTTCATTTGCCTGAAAGAGCTCTGCTGATAACACCAGAAGTACGCCAAAGTATATTGAAATGGAAAGTAAAAGGAACCAAGTGGTCAAGAGAACTCAGAGGACATTAGTGGTCAGTCAGCACAGCTAGCAAGACGGAGCTGCTTCATCTGCATATCACTCTACACAGacaCAAGACCCATTATGTTCTTCTACACTGTATCTGTCGTTTTCTTCTGGGCACTTCTTGCTAATAAATTTGCTACTGACTCTTCAGAGAACGCCTTTTCCCCGTGCATGGATTCTGCCAAGACTGATGCTTACGAGAAATTCCTGAATAAGCATGTACGTTCGGACACCCCAAAAACCCTTGACCAAAATGAGTGGCAAGCTTTTATTAGACGCATAGGGACATGTGATCGACCGGTTCAGTCCTTTATCCCCTTTGCCCAGAAACAACGAGTGGACAACATCTGCTCTCCTTCAGGAGGTAAAACATACATTAATAACCTGTGCGTCAGCAGACAGGAGTTCACCTTCACTACCGTGAACGTGGACAACAACTGTGTTGTACGCAGAGTCATCTCAGAGACGAAGTATCTTCTATTGGCTTGTGATAAGGTCCAGGGTTACTGCCTTCCAGTGCATTTTGAACCCAATCCAAATAATGATGGACCAGACAACAAAAATCCAGACTGCAAAAATCCATACCAGAACCAGGCACAGCTTGCACATCTTAATCTCAGCCTTCTAATACTCACCCTGCTGTCAACAGCCTTAGCTCACTTTATGTGATTATCAGAATTATTAACTTGTCATAGCCTGCAGGatttatacaaaaacacaaatatagcCTCATGCCAATGTCATTGAAACAGTAATACTTGCTGTCACCCTTCAGTGTAATCAAATGTGAGTTTGTGTATGTAACGTGATTGACTGTAATTAGTGCACATTTGCTAATGGGTATTAACAGCAATACTGACCTTAGAAGCCACATTTCTGTATTAACTCCTGGCTGATAATCAcagctgtataataataaatagggTTACTATATGCAGTCAACTCTCTATGCTTACTAGATATGACAGAACTGTTGCCATTTATTTCTTAATCAGCAAATTAGTCACGGGAGCTtgtgcatgtttattttatatcaggTTTTTTTGTCTAACACTTTGACTTACTTGTTTGTCTTACTAATACTTGTGCAAACAAACATGCCTATGTAATATGCTACAAACACTGTAATactgttttataatatattttattaacaaattgcTGGCAATGCATTATACTGTACAAtacagaaaagcagaaacacaGAGGGAACAAATATTAAGATGTATGTACTTTCAGTCTTAAACAAAGAGAAGTGAAATTACATGTCATGATGCAATTGGTCATCTACAAGCAAGTGCACTGACCTTGAATAGGACACATTTTAGCCCATTTTATGTGATCATCAGAATTATTAACCTGACCTAGTCTGAAGGAATTATATAAAAAGGTTTGTTCATAAGCAGTATGTTTCATGGGCATGGCTGTCTGTGATACCCTTCAGTgaaatcaaatgtttttgtgtgcgATGTGTGTAGACAGTTCATCTATTGTCTAtggtaaaaatatatttttatttttgaacagtgtttatggtgggctactggagcaaaccactgatgacaaacaaaaaaaactcatagtgcacctcctattgcTATCACATTAATGAACCTGATCTGTGTCCCTTGAGCATCATACTGATGTTCTTCAAGCAAGAGCCCACattgcatgaaagtaaaaaaccgccatgtggcagcagcacaatgcataaagtcatgcagatacaggtcaagagctctgtgactttaactgtggcatggctgtt
>XR_003404324.2
ATTCCCAGTGAAGTCTGGTAGCTCTATTTTGCTCTGCACTGAACTGACATAAcggtcacttttttttaaaacacttttgttGTTTTCCATAAATGGTCATTGTCTCTTCAGCGTGGTGGAAACAGTAGATGGGAACTCTGTTCAGAAGAGTTCTGTAACTCTTTAGTTTCAGAAAGGGTTGTGAAACCTCTGCAAACATGTGCCTTGTGCAGTATCCTACAACTTCTAGAGTCTTACTGATGTATGTATTTCCACGGTTTGGTTATAATTATGGCTAGAGCTGTTGTTTCATTTGCCTGAAAGAAGTACGCCAAAGTATATTGAAATGGAAAGTAAAAGGAACCAAGTGGTCAAGAGAACTCAGAGGACATTAGTGGTCAGTCAGCACAGCTAGCAAGACGGAGCTGCTTCATCTGCATATCACTCTACACAGacaCAAGACCCATTATGTTCTTCTACACTGTATCTGTCGTTTTCTTCTGGGCACTTCTTGCTAATAAATTTGCTACTGACTCTTCAGAGAACGCCTTTTCCCCGTGCATGGATTCTGCCAAGACTGATGCTTACGAGAAATTCCTGAATAAGCATGTACGTTCGGACACCCCAAAAACCCTTGACCAAAATGAGTGGCAAGCTTTTATTAGACGCATAGGGACATGTGATCGACCGGTTCAGTCCTTTATCCCCTTTGCCCAGAAACAACGAGTGGACAACATCTGCTCTCCTTCAGGAGGTAAAACATACATTAATAACCTGTGCGTCAGCAGACAGGAGTTCACCTTCACTACCGTGAACGTGGACAACAACTGTGTTGTACGCAGAGTCATCTCAGAGACGAAGTATCTTCTATTGGCTTGTGATAAGGTCCAGGGTTACTGCCTTCCAGTGCATTTTGAACCCAATCCAAATAATGATGGACCAGACAACAAAAATCCAGACTGCAAAAATCCATACCAGAACCAGGCACAGCTTGCACATCTTAATCTCAGCCTTCTAATACTCACCCTGCTGTCAACAGCCTTAGCTCACTTTATGTGATTATCAGAATTATTAACTTGTCATAGCCTGCAGGatttatacaaaaacacaaatatagcCTCATGCCAATGTCATTGAAACAGTAATACTTGCTGTCACCCTTCAGTGTAATCAAATGTGAGTTTGTGTATGTAACGTGATTGACTGTAATTAGTGCACATTTGCTAATGGGTATTAACAGCAATACTGACCTTAGAAGCCACATTTCTGTATTAACTCCTGGCTGATAATCAcagctgtataataataaatagggTTACTATATGCAGTCAACTCTCTATGCTTACTAGATATGACAGAACTGTTGCCATTTATTTCTTAATCAGCAAATTAGTCACGGGAGCTtgtgcatgtttattttatatcaggTTTTTTTGTCTAACACTTTGACTTACTTGTTTGTCTTACTAATACTTGTGCAAACAAACATGCCTATGTAATATGCTACAAACACTGTAATactgttttataatatattttattaacaaattgcTGGCAATGCATTATACTGTACAAtacagaaaagcagaaacacaGAGGGAACAAATATTAAGATGTATGTACTTTCAGTCTTAAACAAAGAGAAGTGAAATTACATGTCATGATGCAATTGGTCATCTACAAGCAAGTGCACTGACCTTGAATAGGACACATTTTAGCCCATTTTATGTGATCATCAGAATTATTAACCTGACCTAGTCTGAAGGAATTATATAAAAAGGTTTGTTCATAAGCAGTATGTTTCATGGGCATGGCTGTCTGTGATACCCTTCAGTgaaatcaaatgtttttgtgtgcgATGTGTGTAGACAGTTCATCTATTGTCTAtggtaaaaatatatttttatttttgaacagtgtttatggtgggctactggagcaaaccactgatgacaaacaaaaaaaactcatagtgcacctcctattgcTATCACATTAATGAACCTGATCTGTGTCCCTTGAGCATCATACTGATGTTCTTCAAGCAAGAGCCCACattgcatgaaagtaaaaaaccgccatgtggcagcagcacaatgcataaagtcatgcagatacaggtcaagagctctgtgactttaactgtggcatggctgtt
>XR_004578213.1
CATTCCCAGTGAAGTCTGGTAGCTCTATTTTGCTCTGCACTGAACTGACATAAcggtcacttttttttaaaacacttttgttGTTTTCCATAAATGGTCATTGTCTCTTCAGCGTGGTGGAAACAGTAGATGGGAACTCTGTTCAGAAGAGTTCTGTAACTCTTTAGTTTCAGAAAGGGTTGTGAAACCTCTGCAAACATGTGCCTTGTGCAGTATCCTACAACTTCTAGAGTCTTACTGATAAGTACGCCAAAGTATATTGAAATGGAAAGTAAAAGGAACCAAGTGGTCAAGAGAACTCAGAGGACATTAGTGGTCAGTCAGCACAGCTAGCAAGACGGAGCTGCTTCATCTGCATATCACTCTACACAGacaCAAGACCCATTATGTTCTTCTACACTGTATCTGTCGTTTTCTTCTGGGCACTTCTTGCTAATAAATTTGCTACTGACTCTTCAGAGAACGCCTTTTCCCCGTGCATGGATTCTGCCAAGACTGATGCTTACGAGAAATTCCTGAATAAGCATGTACGTTCGGACACCCCAAAAACCCTTGACCAAAATGAGTGGCAAGCTTTTATTAGACGCATAGGGACATGTGATCGACCGGTTCAGTCCTTTATCCCCTTTGCCCAGAAACAACGAGTGGACAACATCTGCTCTCCTTCAGGAGGTAAAACATACATTAATAACCTGTGCGTCAGCAGACAGGAGTTCACCTTCACTACCGTGAACGTGGACAACAACTGTGTTGTACGCAGAGTCATCTCAGAGACGAAGTATCTTCTATTGGCTTGTGATAAGGTCCAGGGTTACTGCCTTCCAGTGCATTTTGAACCCAATCCAAATAATGATGGACCAGACAACAAAAATCCAGACTGCAAAAATCCATACCAGAACCAGGCACAGCTTGCACATCTTAATCTCAGCCTTCTAATACTCACCCTGCTGTCAACAGCCTTAGCTCACTTTATGTGATTATCAGAATTATTAACTTGTCATAGCCTGCAGGatttatacaaaaacacaaatatagcCTCATGCCAATGTCATTGAAACAGTAATACTTGCTGTCACCCTTCAGTGTAATCAAATGTGAGTTTGTGTATGTAACGTGATTGACTGTAATTAGTGCACATTTGCTAATGGGTATTAACAGCAATACTGACCTTAGAAGCCACATTTCTGTATTAACTCCTGGCTGATAATCAcagctgtataataataaatagggTTACTATATGCAGTCAACTCTCTATGCTTACTAGATATGACAGAACTGTTGCCATTTATTTCTTAATCAGCAAATTAGTCACGGGAGCTtgtgcatgtttattttatatcaggTTTTTTTGTCTAACACTTTGACTTACTTGTTTGTCTTACTAATACTTGTGCAAACAAACATGCCTATGTAATATGCTACAAACACTGTAATactgttttataatatattttattaacaaattgcTGGCAATGCATTATACTGTACAAtacagaaaagcagaaacacaGAGGGAACAAATATTAAGATGTATGTACTTTCAGTCTTAAACAAAGAGAAGTGAAATTACATGTCATGATGCAATTGGTCATCTACAAGCAAGTGCACTGACCTTGAATAGGACACATTTTAGCCCATTTTATGTGATCATCAGAATTATTAACCTGACCTAGTCTGAAGGAATTATATAAAAAGGTTTGTTCATAAGCAGTATGTTTCATGGGCATGGCTGTCTGTGATACCCTTCAGTgaaatcaaatgtttttgtgtgcgATGTGTGTAGACAGTTCATCTATTGTCTAtggtaaaaatatatttttatttttgaacagtgtttatggtgggctactggagcaaaccactgatgacaaacaaaaaaaactcatagtgcacctcctattgcTATCACATTAATGAACCTGATCTGTGTCCCTTGAGCATCATACTGATGTTCTTCAAGCAAGAGCCCACattgcatgaaagtaaaaaaccgccatgtggcagcagcacaatgcataaagtcatgcagatacaggtcaagagctctgtgactttaactgtggcatggctgtt

Function

GO: NA

KEGG:

id description
ko04640 Hematopoietic cell lineage
ko04611 Platelet activation
ko04662 B cell receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404323.2 True 2159 lncRNA 0.39 3 21934683 21937785
XR_003404324.2 False 2137 lncRNA 0.39 3 21934683 21937783
XR_004578213.1 False 2076 lncRNA 0.39 3 21934683 21937784

Neighbor

gene id symbol gene type direction distance location
deptor deptor,LOC107685573 coding downstream 8999 21893147 ~ 21925684 (-)
col14a1a col14a1 coding downstream 52473 21792011 ~ 21882210 (-)
mtbp mtbp coding downstream 162976 21748221 ~ 21771707 (-)
mrps2 mrps2 coding downstream 420328 21509640 ~ 21514355 (-)
setd2 setd2,LOC106606040,LOC107743179,LOC107673014,LOC107685560,LOC107752833,LOC107581536 coding downstream 455450 21455371 ~ 21479233 (-)
polr3c polr3c,LOC107673034,LOC107707173,LOC107743190,LOC107685575 coding upstream 70450 22008235 ~ 22019237 (-)
gba gba,LOC107596705,LOC107598447 coding upstream 94683 22032468 ~ 22038626 (-)
dap3 dap3,LOC106597783 coding upstream 103350 22041135 ~ 22045666 (-)
rusc1 rusc1 coding upstream 149564 22087349 ~ 22101094 (-)
fdps fdps,LOC107673012 coding upstream 165312 22103097 ~ 22110703 (-)
G12377 NA non-coding downstream 4540 21927459 ~ 21930143 (-)
G12373 NA non-coding downstream 75843 21857615 ~ 21858840 (-)
G11974 NA non-coding downstream 399484 21493358 ~ 21535199 (-)
G11961 NA non-coding downstream 410968 21475423 ~ 21523715 (-)
G12498 NA non-coding upstream 395340 22333125 ~ 22334604 (-)
G12639 NA non-coding upstream 752191 22689976 ~ 22690185 (-)
G12641 NA non-coding upstream 753186 22690971 ~ 22691193 (-)
G12642 NA non-coding upstream 753503 22691288 ~ 22691526 (-)
G12656 NA non-coding upstream 811828 22749613 ~ 22753941 (-)
rxrbb rxrbb,LOC108267229,LOC108413045,LOC107596638,LOC107581542 other downstream 659342 21263577 ~ 21275341 (-)
G10832 LOC108267614 other downstream 2111000 19816477 ~ 19823683 (-)
trnaq-cug_9 NA other downstream 2187800 19746526 ~ 19746883 (-)
trnaq-uug NA other downstream 2188743 19745650 ~ 19745940 (-)
LOC117597712 NA other downstream 2231523 19702611 ~ 19703160 (-)
aicda aicda other upstream 748622 22686407 ~ 22691804 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other upstream 963566 22901351 ~ 22908140 (-)
LOC113542417 NA other upstream 1182687 23120472 ~ 23129313 (-)
cxcr3.2 LOC108266514 other upstream 1195141 23132926 ~ 23165584 (-)
cicb cic,LOC107582035 other upstream 1539373 23477158 ~ 23527323 (-)

Expression


Co-expression Network