LOC117595754


Basic Information

Item Value
gene id LOC117595754
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 30637849 ~ 30640024 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004576931.1
AAAAAGATACAATAGCACcaagtgagaaaacagaaaaaAATTGTAAACATGAAATGGTCTTCACAACTGTTTCGAGCATGAACAAATGTGCAGCATGTGTTGGACCTGTAGCATCACTCAAATGGATTGGTCTGAGATGCAAAGtCTGCAATTGTTTTGGCACAAGTCCTGCTTTGTAAAACTTATTAAGAATGAGTCACTATCATGGGGATGCAGAAGGATCACCCACCAAAAGAAGCCAAAGCTGGATGTTCTGGTTGTATTTTCCAAGTTATATATGtggttttgacttttattttagtcatataactcataattatcatttttgttttacctatttttaattt
>XR_004576936.1
AAAAAGATACAATAGCACcaagtgagaaaacagaaaaaAATTGTAAACATGAAATGGTCTTCACAACTGTTTCGAGCATGAACAAATGTGCAGCATGTGTTGGACCTGTAGCATCACTCAAATGGATTGGTCTGAGATGCAAAGtCTGCAATTGTTTTGGCACAAGTCCTGCTTTGTAAAACTTATTAAGAATGAGTCACTATCATGGCTTCCAAACCCCAGGAGATATCTGGTGTGGGAATGTAGACTCTGCCATGGCTGCCAAACCCAAAACCCTGACCCTACCGTGGTGTTCATTTAGTTCTCCTGGCTAAACTGATGGAAGTGAATCTGAGAATGGCACTGAAAGTGAGAATATGAATGTGTCTATGAGTGCACCAGTGCAGATTGGTAGGTTTTTCTAACATATTGATGTGTTACATGCCCAATTGTTTTGGTCATGATCAGTCCACACTGTTTGTGTGCTGAATAATGTGGTAATCTCTTCTTACAGGGATGCAGAAGGATCACCCACCAAAAGAAGCCAAAGCTGGATGTTCTGGTTGTATTTTCCAAGTTATATATGtggttttgacttttattttagtcatataactcataattatcatttttgttttacctatttttaattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004576931.1 False 347 lncRNA 0.34 4 30637849 30640024
XR_004576936.1 True 632 lncRNA 0.38 4 30637849 30640024

Neighbor

gene id symbol gene type direction distance location
trnah-gug NA coding downstream 4712 30633066 ~ 30633137 (-)
xrcc2 xrcc2 coding downstream 51159 30582017 ~ 30586690 (-)
kmt2ca kmt2c coding downstream 75936 30400155 ~ 30561913 (-)
ptchd3a ptchd3 coding downstream 293129 30338950 ~ 30344720 (-)
anxa13 anxa13,LOC108272932,LOC108431991,LOC107570049,LOC107675241,LOC107588022 coding downstream 429775 30193051 ~ 30208074 (-)
LOC117595698 NA coding upstream 145939 30785963 ~ 30789410 (-)
LOC113547558 LOC108268894,LOC108264971,LOC108273546,LOC108270747,LOC108257668,LOC108270753 coding upstream 329993 30970017 ~ 30982915 (-)
ntng1a ntng1,LOC102781425 coding upstream 526402 31166426 ~ 31312036 (-)
prmt6 prmt6 coding upstream 685890 31325914 ~ 31327457 (-)
arhgap29a arhgap29 coding upstream 1292445 31932469 ~ 31991048 (-)
G16897 NA non-coding downstream 265 30637083 ~ 30637584 (-)
LOC117597677 NA non-coding downstream 255274 30379844 ~ 30382575 (-)
G16747 NA non-coding downstream 306236 30331397 ~ 30331613 (-)
G16721 NA non-coding downstream 388172 30249464 ~ 30249677 (-)
G16709 NA non-coding downstream 462485 30175024 ~ 30175364 (-)
LOC117596846 NA non-coding upstream 123561 30763585 ~ 30764477 (-)
G17000 NA non-coding upstream 126165 30766189 ~ 30766709 (-)
G17025 NA non-coding upstream 201941 30841965 ~ 30889214 (-)
LOC117598443 telo2 non-coding upstream 359456 30999480 ~ 31001678 (-)
G17222 NA non-coding upstream 389432 31029456 ~ 31029677 (-)
gpr158a gpr158 other downstream 304629 30232323 ~ 30333220 (-)
pcolce2b pcolce2,LOC108272785,LOC107566300,LOC107675309,LOC107588030 other downstream 823035 29797753 ~ 29814814 (-)
dipk2ab cunh3orf58,dia1b,LOC108272730,LOC107687522,LOC107741829,LOC107739121,LOC107588034 other downstream 1033611 29548166 ~ 29604238 (-)
sugct sugct,LOC107687505,LOC107713787 other downstream 3084343 27445558 ~ 27553506 (-)
f13a1a.1 LOC108263067 other downstream 3880606 26745018 ~ 26757243 (-)
G16900 NA other upstream 674 30640698 ~ 30642974 (-)
telo2 telo2 other upstream 348099 30988123 ~ 31014649 (-)
G17199 telo2 other upstream 362385 31002409 ~ 31003309 (-)
rnpc3 rnpc3 other upstream 944717 31584741 ~ 31611972 (-)
G17630 LOC108267341 other upstream 1360601 32000625 ~ 32052554 (-)

Expression


Co-expression Network