LOC117597063


Basic Information

Item Value
gene id LOC117597063
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 20870795 ~ 20879814 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577995.1
TGGACTGTCCAATTACGtcgctttgctttgctttgaagttatttgtttttaacagaGCAGCAGTCAACAGCAGGGCGCTCGTTTTCAAAACTAGGACTAGTTAAGAAGTGTGTGCTGCGGAGCAGTATTTCTCAGGTTAGattaaagatagatagatatatagattaCAGAAAGATAGATATGGTCtggcagtgagtgtgtgagagcctGGGGCTGTGAATTAAAAGAGCACCATCCACAACATTGCTGAAATCAAAGAGCATTAAATGTGCAAAGCAGGTGATCAGTTTGTGGTGCTGTGTGTGATGGAAACTGGCTGAAGAAAGAGCCATGCCGGCATGTCTTGCTAACACTGCAGCTCCCCCACCCTGCCAGTTCATACTGTAATGGACAAAACACATGGGCAGAATgCTACAGAAAAGTGTTGGGTAGTGTCAGTGGGTTGGACACCACGACTGAGGTTCTCTCAAATGCCGACTGAGGAGACAGCAGGAGCATCCGTCCTTCTCCTCTGTTGTTTTTGGCCTGGGCTTAGAAGTTCCTCCCCTGCACATTATGctccccccacccacacacatacacacacacacacacacacacacacctcagtctgTCACACCACCCTTCTTCACTGTgttcgacacacacacacagctgcagcacTTTTAGTGACCCTGACtgatgcacatacacacacacagttacccatacagaaacatgcacagGAAATCTAGTGCACTCTGTTGTGTAATTATCATCCAGATAGATCCTTGTGCAGAAAGAAGTCTGAGGAATTGTATATTCATCAATCCTTCTGaagatcttttcttttctgcacAGAAATGGAGTCTGACTCACTTGATTATCATGTAGTAATATCCAAAAAAGCATGGCTTCCTCTAACTCTGCTGAAACACTGCCAAATATCCGGCACTGCTTTATTTTGCTAAATGGCCTGAGCGATATCATTAGCATTTGGTCACTGATAAAAGTGATCAAGACTACCCCCCTACCCCAACCCCTAATTTTAGTGAATCCAGGAAATAGTATACTTTGGAATGCAAGAATATCATAAATTATGTAATGTAGCGACTACGAGGATTAACTCAGTGTTATTGTAATGTCCATTGTCTTTCAAATTATTATTctattacagttacagtaattATAGTTActtaaaaaatgtgtgatgttttatGACTTTTTCTGGGGTGAAACGTTGAATCTCTGTGTTTGTAATGGCTTCATTTCTTGATTACATTAGTGACAGAGAACTGTACGCCCACCTACCAGGATATTGTTTGGCCAATAAAATTAGACAGAGTTAAAGCAACAGTGAGAATCCTGCTGATAATCACAgtacagataatgtgttctctagaaaaatgcattcataaatatgattttatattgATGCACttacaacaaacaaaacattgaTCTGAAAATTACCTGTTTTCTACAGCGTGGATGTATGCTGAGATATTTGACTATGAATGTGAGTCCGGACATGCACATACAATTACATGCTAACTTTAATTTGTGCTAAATAGATAGTTCAGTTTTTGCAATTAATTAACCAAGTCAGTAATATTAGGCCACATAGTTGTGAAGGAGAAGCTTAGTTTTTACATCAAACTCTGTACATGAACAACTCATGAACTTCAAGATGTCTTTAGACCTCAGTGTACTTTTACACCTaacaaatgtaatttgtagGCATTTTCACAATCCATTTTCACAAACTATTTCATGAATCATTCAGATATATCATAAGAATTGGCCAGATTTGAGCTTCCTGAAGAACACCAGGCTGCTATTACATTACTTAAATATCAATCTTTAAAGTGGACAGAACATAATTTtccattatttatatatttacaagaTTTATAAAGAACAGTGTGTTTTAAGAGGTTCTCTGTTATTTTTGTGGATTTGAGATATTGACATTCATATCAGCAAAGGCATGagtaaataaaactattatcTGTACGATTTTTGACTATACATTGGCCATTATTAACAGttctcagttatttattttttagatccTAAAAAAGGTTTAGGTATCAGTGACAACAAATTAATTTCTGTAAGAACCAATTCCTCTAAAGCAATTAGTTCAAAGATTATTGCCTTTATTCAGACAGTTCcacagtttatttattcaaactTGTCTAATCTTTAGCAGTTTCCCCATTTCTCTTGGCAGAAGGCCTCTATCAGTACTGATATGGTGTCTGAGTGCAGTCTGTCTGAGAACTGCTCTTTCCATAGACTCAGGCTAAATGGTGCCAGCCACATCTGGATAGCTGTCACCTCTCCTGCCTGATAGAAGATACTGTAAGTGTTGCTGGTAGATGCTTCACATTGAGGATGTGTTCTTACAGTATTGGAATGTCATCCAGAACTGGAACTTGACCCTGTCTAACACCTAGGGCCTCCTGCCTTTCACTTCATTTAACAGCAGATTAGTCTTACTAATCAGCCATGTGTTTGAACAACTCACTAATTCAGTTACTTTCAGGGTGGGGTTTGTGTGGGAgagtaaatgtttattaattatctTAAAAGCTTGCTGAAATGCCctgttattttttccccttcatatGTGAAATCGTCAACGGAGAAGCAGTTCTTTCCACAGCTCAGCTGATACATAATAAAGCAAATAGCGAGGCTTTCATTGATAGGCTCTGGCTCCAGTAGATTTGGCTGTGCACACACTGCTTAGGGAGAGGCTGTGAAATATTTGGCTCCTGAACTCCTCCTGGCTTTTGAGTCAGTACATGAATCATCATCACTAACTTAGTCGGAGTCAAAAAACCCTCTTGTTCACTCACAAGTCATAAACAGAGAAGTTGATCTTGTATGACATGTGGCGTTTAGCATACAGAATTTATCCAGCATACTTTGTGGCTTGTAAAAATCTACAAGTATTATCCTTAAAAATGAAGAGAGCCAAGGTCATTTTACAACTCCTCATCCATCTACACAGCCTCTGTGTGCAGTATAGCACTGCAGTTTGTTATGTAAAGGGGCAGACAATGTACTTTATCCACAATAATCTTGATTTCACTGGAACTGTATAAATCTCCATGGTATTGCAGCAGTCTGATGTAATGCCAGAAAAGGCTTTCTGCTTtgtgatgtactgtataaacATGCAACCATGTTAACACAAAGGCTTCTGCCCACAACACAACCTGTCTTCACCTATGACACAGAATGGACTCTAAGCTATTTCTTTATGTTGGGCTCAACCCTTCTACGTGATTATGAATTCATTTTGGATGTTTAatctaccttttttttaaaattacttttcttATCAGTATGGAGTGTCTTAGTAGCCACAGCACTGATCTCTTATGCATGAActctcacattaaaaaaaaaacacttgtttgATGTTATTTTCCTCACACCATCTTGACACTTTTTAAATCTCATCTTTATATTAAGTTATGAAGCATAATAGAATTTTAggttttaattatattattatctatttgtaatgtaattacatttttatattgcattttataacaaaagaaaagaaaat

Function

GO: NA

KEGG:

id description
ko04146 Peroxisome

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577995.1 True 3568 lncRNA 0.38 3 20870795 20879814

Neighbor

gene id symbol gene type direction distance location
twist1b twist1,LOC108256329,LOC103366955,LOC100712142,LOC107378688,LOC107103781 coding downstream 47 20868371 ~ 20870748 (-)
ankrd28b ankrd28,ankrd44,ankrd28b,LOC107685545,LOC107596646,LOC107745379,LOC107550837,LOC107684548 coding downstream 119247 20733426 ~ 20751548 (-)
LOC117598413 LOC108267376 coding downstream 141736 20727452 ~ 20729059 (-)
hacl1 hacl1,LOC107745383,LOC107684560,LOC107743162,LOC107685543 coding downstream 143579 20714462 ~ 20727216 (-)
colq colq coding downstream 157037 20698032 ~ 20713758 (-)
LOC113542419 LOC103028094,LOC108440250,LOC108440212,LOC108440210 coding upstream 5253 20885067 ~ 20885871 (-)
macc1 macc1,LOC107728525,LOC107550840,LOC107684550 coding upstream 16555 20896369 ~ 20904246 (-)
sp8b sp8b,sp8,LOC108261619,LOC105906357,LOC101158882 coding upstream 66383 20946197 ~ 20949609 (-)
rapgef5b LOC108267288,LOC107596719,LOC107674937,LOC107743169 coding upstream 177062 21056876 ~ 21105333 (-)
si:ch211-254p10.2 LOC108262958,LOC107752844,LOC103366948 coding upstream 233052 21112866 ~ 21118416 (-)
LOC113542610 NA non-coding downstream 3909 20865805 ~ 20866886 (-)
G11569 NA non-coding downstream 25314 20845265 ~ 20845481 (-)
G11545 NA non-coding downstream 71383 20796750 ~ 20799412 (-)
G11523 NA non-coding downstream 193949 20674251 ~ 20676846 (-)
G11349 NA non-coding downstream 347573 20522679 ~ 20523222 (-)
G11806 fhod3,LOC107743170,LOC107662660 non-coding upstream 358221 21238035 ~ 21239276 (-)
G11961 NA non-coding upstream 595609 21475423 ~ 21523715 (-)
G11970 NA non-coding upstream 600805 21480619 ~ 21483699 (-)
G11973 rbm12b non-coding upstream 607896 21487710 ~ 21493209 (-)
G11974 NA non-coding upstream 613544 21493358 ~ 21535199 (-)
G10832 LOC108267614 other downstream 1047112 19816477 ~ 19823683 (-)
trnaq-cug_9 NA other downstream 1123912 19746526 ~ 19746883 (-)
trnaq-uug NA other downstream 1124855 19745650 ~ 19745940 (-)
LOC117597712 NA other downstream 1167635 19702611 ~ 19703160 (-)
trnaq-cug_8 NA other downstream 1171158 19699566 ~ 19699637 (-)
rxrbb rxrbb,LOC108267229,LOC108413045,LOC107596638,LOC107581542 other upstream 383763 21263577 ~ 21275341 (-)
aicda aicda other upstream 1806593 22686407 ~ 22691804 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other upstream 2021537 22901351 ~ 22908140 (-)
LOC113542417 NA other upstream 2240658 23120472 ~ 23129313 (-)
cxcr3.2 LOC108266514 other upstream 2253112 23132926 ~ 23165584 (-)

Expression


Co-expression Network