LOC117597511


Basic Information

Item Value
gene id LOC117597511
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 32943960 ~ 32945004 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578297.1
caggagtgaagctgctctctgatctactgaaggatccacactgtaaactggagaaactgCTaTTTAAGCCGCTTtaattctgatctgatctgagtctcacacacagaggatgatgaggataaactcttacagtacaaagtgtttgaaaaacatgatcatTTAGTGATAATCAGATGGTGTACAACATGTCAGCACTTCTGCTTCTCTAgttgtttgtaaaaatgcaccagctgagataaataaactttaactgtacagtaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578297.1 True 261 lncRNA 0.38 2 32943960 32945004

Neighbor

gene id symbol gene type direction distance location
ccdc78 LOC108269459 coding downstream 48110 32876470 ~ 32895850 (-)
fam234a fam234a coding downstream 247249 32687597 ~ 32696711 (-)
tmem204 tmem204 coding downstream 321226 32610019 ~ 32622734 (-)
LOC113547549 NA coding downstream 368529 32562537 ~ 32575431 (-)
LOC113547553 NA coding downstream 404613 32521620 ~ 32539347 (-)
LOC117597388 NA coding upstream 13617 32958621 ~ 32972206 (-)
mybpc2b mybpc2b,LOC108272997,LOC107667118,LOC107718022 coding upstream 305843 33250847 ~ 33284417 (-)
fgf21 LOC108263130 coding upstream 374860 33319864 ~ 33326553 (-)
LOC117597600 LOC108261633,LOC108268894,LOC108273545,LOC108263642,LOC108270753,LOC108263117,LOC108410737,LOC108261292,LOC108412218 coding upstream 483920 33428924 ~ 33453389 (-)
LOC113524648 LOC108270747,LOC108273219,LOC108261257,LOC108257668,LOC108273692,LOC108260129,LOC108274210 coding upstream 516774 33461778 ~ 33472267 (-)
G18176 NA non-coding downstream 824 32923002 ~ 32943136 (-)
G18157 ptx4 non-coding downstream 135694 32799683 ~ 32808266 (-)
G18110 NA non-coding downstream 214922 32684517 ~ 32729038 (-)
G18182 NA non-coding upstream 36071 32981075 ~ 32981310 (-)
G18197 LOC108273185 non-coding upstream 68776 33013780 ~ 33061512 (-)
G18224 NA non-coding upstream 188304 33133308 ~ 33133510 (-)
G18231 NA non-coding upstream 205256 33150260 ~ 33150876 (-)
G18275 LOC108277266 non-coding upstream 227302 33172306 ~ 33172879 (-)
G18097 ift140 other downstream 347155 32589902 ~ 32596805 (-)
G17630 LOC108267341 other downstream 891406 32000625 ~ 32052554 (-)
rnpc3 rnpc3 other downstream 1331988 31584741 ~ 31611972 (-)
telo2 telo2 other downstream 1929311 30988123 ~ 31014649 (-)
G18432 NA other upstream 626375 33571379 ~ 33571830 (-)
dnah3 dnah3,LOC108263105 other upstream 627749 33572753 ~ 33616366 (-)
G18848 NA other upstream 1070044 34015048 ~ 34037333 (-)
LOC113524641 cox6b1,LOC108270924,LOC108413555,LOC107687105,LOC107556657,LOC107753036,LOC105926733,LOC107667149 other upstream 1321300 34266304 ~ 34270306 (-)
G19006 LOC108270747,LOC108273692,LOC108263642,LOC108270753,LOC108273544,LOC108261406,LOC108264948 other upstream 1339062 34284066 ~ 34998396 (-)

Expression


Co-expression Network