LOC117597861


Basic Information

Item Value
gene id LOC117597861
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 26448656 ~ 26452315 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578627.1
aaaaaaatcttcttggATAATGAAAGCCTCTCTGCTGTAAAGGATTACAAGGCTGTAAAACAATCATGTGAATACAACAGCATTTTTACTGCTGAGGCAACGTGGTTCTGCAAACTGCTGAGTTCTTCTAAAAGTTTACAGCACTTAGCTGCAGAACAGGTTGAGAGagcctTGTCCCACttgacttgttttgatagctccttcgTCTTCATGAACAGGTGTATGGGGCcgtccaggaacaggtgtattactattgagatcatgtggcactttaattgcacacaggtagactccattcaactaattatgtgacttgtGATGGCACCTGGTTGCCCCAGAAATAATTTTGGGGTTTCACAGTAACAGGGGTGAGTACTtgtgcaatcacaacttttaaatttttttacatcatttttatatttttatatttacaagcTATTTTGTTTCGATTCGTTCCATATAATCTCAATttagttcatttcatttcaaggttgtaacacaacaaaatgtggaaaatttcATGGGggtgtgaatatttatgcagagCAAGGCACTGTAAATAATATTGTTATTCACTATGATGTTGtccagtatttatttatatttccattCCACTGGGAGAAAAATGTGGagtctttcatttaaaaaaaagagatacaGTGATTTAATcagtttcaaataaaattgagaggaggagaaaagcatTTTAATATTCCCTCTCTGTGACCTGATGCAGGTTCTGGGTGGATGTAAATTGTCACTCTATATGCAGTATATGAGTACCATTCAAATAGATATGAGCCTAGTTTTGTATAACTGAAAAACACTGCCTGGAATCTTTGTCAAGATAGCCACAGAGTGGGctgcataataataaataagctaCATATGGAGTTTTCCTTTACTGACACTTCAAGACATTTGAGCCACACATTACTCTGTTAATGCTGGACAAACACAATGCTGTATTTTGCAATCTTAATGGATGCAAAGTCAAGCAGAGATGCTGAGTAGAGACACATATCCAGACCTTATCCGTGTGGAGGTCCAATTGTACCAACGCATTAGGACTAGGGGGCAAAGCATTAGCAGATGGTACAAAAGTCATAAATGAAAATAGGTGAACAAAGAAACGTAAGAAAATCCAAATTTGCAAAGAACACTGCCAAAGCCTGGGATTTCTGCTGGAATCATTCCAATATGCCAAAACCTATATTACAGTTTCATGGAAAACTAAGACAGCAATTAATATAGATATCTTAGATATTTGAGTTTGGGAAAACAGCCAGGAACAGCTGTGATCACCGTCAGGAAGTCACATATGTACGTCATATGAAGACATGACTGGGGCTTCACAGTGGTGATCTGGCACCACAAAACTGCCATCTGGAGTGTTGTGGTTGATCCCATTGTTGTTCTAAGGCTAGCTTTCCTATAGTAGTGGCAGTGGCAGTTGTTGTCAGAGACACTATTATATGTAGAATTAGCTGCCCTTGTGACTGTTTGATTTGCATTAGGAGGGCTACAGAAATTCATGATGCATACCAGATAGGATCCTGATCCATGAAGATTACTTTGGTGAGATAAGAATTtctgtaaaatgctgtaaatgtaaatgtcattgCAACACCCTGTTAGAAATATGTATTACCTGACTACAGAAGCATAACcttgttctttttcttcaggTTCTTTTGGAGAAATAAAAGATTTGTATCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578627.1 True 1720 lncRNA 0.37 2 26448656 26452315

Neighbor

gene id symbol gene type direction distance location
cul2 cul2 coding downstream 2555 26425384 ~ 26446101 (-)
pard3aa pard3,LOC108431315 coding downstream 29617 26038040 ~ 26419039 (-)
nrp1a nrp1,nrp1a,LOC106578544,LOC107565689 coding downstream 607713 25772592 ~ 25840943 (-)
si:ch211-79k12.1 LOC108265448 coding downstream 726412 25713466 ~ 25722244 (-)
rps19 rps19,LOC107657656,LOC100689943 coding downstream 920725 25521489 ~ 25527931 (-)
LOC113545413 lyrm4 coding upstream 78444 26530759 ~ 26576298 (-)
nrn1a nrn1,nrn1a,LOC107713755,LOC107734388,LOC105890828 coding upstream 282896 26735211 ~ 26740685 (-)
LOC113545483 ralyl,LOC108431401,LOC100330501 coding upstream 398395 26850710 ~ 27020775 (-)
rmdn1 rmdn1,LOC107729932,LOC107756855,LOC107668150 coding upstream 856701 27309016 ~ 27319449 (-)
LOC113545464 LOC108263316 coding upstream 1339793 27792108 ~ 27795840 (-)
G15174 NA non-coding downstream 1716 26446652 ~ 26446940 (-)
G15163 NA non-coding downstream 41527 26403523 ~ 26407129 (-)
G15111 NA non-coding downstream 134329 26310023 ~ 26314327 (-)
G15012 NA non-coding downstream 338823 26104667 ~ 26109833 (-)
G14506 NA non-coding downstream 606698 25841122 ~ 25841958 (-)
G15313 NA non-coding upstream 281047 26733362 ~ 26782469 (-)
LOC117598133 NA non-coding upstream 370920 26823235 ~ 26836478 (-)
G15438 NA non-coding upstream 668871 27121186 ~ 27121502 (-)
G15506 LOC108266640 non-coding upstream 925030 27377345 ~ 27378160 (-)
G15528 LOC108266640,LOC108431537,LOC107600138,LOC107683489,LOC107593113,LOC107713778,LOC107687503,LOC107734392 non-coding upstream 933976 27386291 ~ 27388809 (-)
fxyd7 LOC108429921,LOC103043934 other downstream 683962 25758055 ~ 25764694 (-)
cadm4 cadm4,LOC107714698,LOC107657657,LOC107699529 other downstream 743141 25547034 ~ 25705515 (-)
bcam bcam other downstream 961231 25395487 ~ 25487425 (-)
G14258 NA other downstream 1044350 25400756 ~ 25404306 (-)
rps27.2 rps27,LOC107699547,LOC108429942,LOC107582081,LOC106605923,LOC107379597,LOC100304576,LOC100705775 other downstream 1181885 25262040 ~ 25266771 (-)
LOC113545420 c1h18orf63 other upstream 14496 26466811 ~ 26512794 (-)
f13a1a.1 LOC108263067 other upstream 292703 26745018 ~ 26757243 (-)
sugct sugct,LOC107687505,LOC107713787 other upstream 993243 27445558 ~ 27553506 (-)
dipk2ab cunh3orf58,dia1b,LOC108272730,LOC107687522,LOC107741829,LOC107739121,LOC107588034 other upstream 3095851 29548166 ~ 29604238 (-)
pcolce2b pcolce2,LOC108272785,LOC107566300,LOC107675309,LOC107588030 other upstream 3345438 29797753 ~ 29814814 (-)

Expression


Co-expression Network