LOC117598396


Basic Information

Item Value
gene id LOC117598396
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 28417116 ~ 28434542 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579059.1
CATTAAGTAGGCCATGATAAAGCAGCAGAAAACCAGGGAAAGGCAGAAACTCCTGCATGTACGCGTTATTCTACAGGACGTAGCTTTCAGGAAACTGCATCTTACGCTGGCTCCTTCGCTGCATAGTCATCTTTCTCTCGGTCTTTCAACCCTGTGACACCACCGAGAGATAAAAGGGATGGGAAAAAACTGAAAGCCAAGAATGAAACATGCAAGGGACTGGAAATTTCTGGAACACATCATTAGGTTTGTCACACATCTTAGCCCCACACCCTGCCGTTTCTCTG

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579059.1 True 287 lncRNA 0.46 3 28417116 28434542

Neighbor

gene id symbol gene type direction distance location
trnar-ccu_3 NA coding downstream 160799 28256245 ~ 28256317 (-)
trnar-ccu_2 NA coding downstream 161549 28255495 ~ 28255567 (-)
trnar-ccu_1 NA coding downstream 165988 28251056 ~ 28251128 (-)
trnam-cau NA coding downstream 171155 28245890 ~ 28245961 (-)
trnar-ccu NA coding downstream 171702 28245342 ~ 28245414 (-)
wdr37 wdr37,LOC107687510 coding upstream 166496 28601038 ~ 28638002 (-)
bdh1 bdh1,LOC108272495,LOC108431739,LOC107734382,LOC107683485 coding upstream 357320 28791862 ~ 28803226 (-)
gyg1b glyg,gyg1,LOC107713835,LOC107734383,LOC107687507,LOC107600139 coding upstream 372953 28807495 ~ 28833465 (-)
cpb1 cpb1 coding upstream 401790 28836332 ~ 28847982 (-)
agtr1b agtr1,LOC108431759 coding upstream 416819 28851361 ~ 28866487 (-)
G15852 NA non-coding downstream 210516 28206157 ~ 28206600 (-)
G15849 NA non-coding downstream 240270 28175684 ~ 28176846 (-)
G15842 NA non-coding downstream 330298 28085261 ~ 28086818 (-)
G15840 NA non-coding downstream 366070 28050808 ~ 28051046 (-)
G15528 LOC108266640,LOC108431537,LOC107600138,LOC107683489,LOC107593113,LOC107713778,LOC107687503,LOC107734392 non-coding downstream 1028307 27386291 ~ 27388809 (-)
LOC113545501 NA non-coding upstream 2289 28436831 ~ 28453100 (-)
G16228 NA non-coding upstream 587095 29021637 ~ 29021844 (-)
G16291 NA non-coding upstream 774865 29209407 ~ 29212056 (-)
G16566 NA non-coding upstream 1439065 29873607 ~ 29953285 (-)
G16582 NA non-coding upstream 1469936 29904478 ~ 29907424 (-)
sugct sugct,LOC107687505,LOC107713787 other downstream 863610 27445558 ~ 27553506 (-)
f13a1a.1 LOC108263067 other downstream 1659873 26745018 ~ 26757243 (-)
LOC113545420 c1h18orf63 other downstream 1904322 26466811 ~ 26512794 (-)
fxyd7 LOC108429921,LOC103043934 other downstream 2652422 25758055 ~ 25764694 (-)
cadm4 cadm4,LOC107714698,LOC107657657,LOC107699529 other downstream 2711601 25547034 ~ 25705515 (-)
dipk2ab cunh3orf58,dia1b,LOC108272730,LOC107687522,LOC107741829,LOC107739121,LOC107588034 other upstream 1113624 29548166 ~ 29604238 (-)
pcolce2b pcolce2,LOC108272785,LOC107566300,LOC107675309,LOC107588030 other upstream 1363211 29797753 ~ 29814814 (-)
gpr158a gpr158 other upstream 1797781 30232323 ~ 30333220 (-)
G16900 NA other upstream 2206156 30640698 ~ 30642974 (-)
telo2 telo2 other upstream 2553581 30988123 ~ 31014649 (-)

Expression


Co-expression Network