trnaf-gaa


Basic Information

Item Value
gene id trnaf-gaa
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 29989218 ~ 29989290 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnaf-gaa
gcCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTaaaggtccctggttcgatcccgGGTTTCGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaf-gaa True 73 tRNA 0.53 1 29989218 29989290

Neighbor

gene id symbol gene type direction distance location
pdss1 pdss1,LOC106590306,LOC107675251,LOC107739114 coding downstream 64008 29918872 ~ 29925210 (-)
acbd5a acbd5 coding downstream 137019 29834929 ~ 29852199 (-)
chst2b chst2,LOC108272780 coding downstream 235137 29751083 ~ 29754081 (-)
zic1 zic1,LOC107588038 coding downstream 955334 29025991 ~ 29033884 (-)
agtr1b agtr1,LOC108431759 coding downstream 1122731 28851361 ~ 28866487 (-)
gad2 gad2,LOC107687529,LOC107675215 coding upstream 37133 30026423 ~ 30060595 (-)
myo3a myo3a coding upstream 78233 30067523 ~ 30111302 (-)
LOC117597071 myo3a coding upstream 126015 30115305 ~ 30163697 (-)
LOC117597070 NA coding upstream 200265 30189555 ~ 30190190 (-)
anxa13 anxa13,LOC108272932,LOC108431991,LOC107570049,LOC107675241,LOC107588022 coding upstream 203761 30193051 ~ 30208074 (-)
G16566 NA non-coding downstream 35933 29873607 ~ 29953285 (-)
G16582 NA non-coding downstream 81794 29904478 ~ 29907424 (-)
G16291 NA non-coding downstream 777162 29209407 ~ 29212056 (-)
G16228 NA non-coding downstream 967374 29021637 ~ 29021844 (-)
LOC113545501 NA non-coding downstream 1536118 28436831 ~ 28453100 (-)
G16629 NA non-coding upstream 160052 30149342 ~ 30149588 (-)
G16709 NA non-coding upstream 185734 30175024 ~ 30175364 (-)
G16721 NA non-coding upstream 260174 30249464 ~ 30249677 (-)
G16747 NA non-coding upstream 342107 30331397 ~ 30331613 (-)
LOC117597677 NA non-coding upstream 390554 30379844 ~ 30382575 (-)
pcolce2b pcolce2,LOC108272785,LOC107566300,LOC107675309,LOC107588030 other downstream 174404 29797753 ~ 29814814 (-)
dipk2ab cunh3orf58,dia1b,LOC108272730,LOC107687522,LOC107741829,LOC107739121,LOC107588034 other downstream 384980 29548166 ~ 29604238 (-)
sugct sugct,LOC107687505,LOC107713787 other downstream 2435712 27445558 ~ 27553506 (-)
f13a1a.1 LOC108263067 other downstream 3231975 26745018 ~ 26757243 (-)
LOC113545420 c1h18orf63 other downstream 3476424 26466811 ~ 26512794 (-)
gpr158a gpr158 other upstream 243033 30232323 ~ 30333220 (-)
G16900 NA other upstream 651408 30640698 ~ 30642974 (-)
telo2 telo2 other upstream 998833 30988123 ~ 31014649 (-)
G17199 telo2 other upstream 1013119 31002409 ~ 31003309 (-)
rnpc3 rnpc3 other upstream 1595451 31584741 ~ 31611972 (-)

Expression


Co-expression Network