trnar-ccu


Basic Information

Item Value
gene id trnar-ccu
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 28245342 ~ 28245414 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnar-ccu
GCCccagtggcctaatggataaggCACTGGCCTCCTAAGCCAGGgattgtgggttcgagtcccatctggggtg

Function

NR:

description
PREDICTED: phospholipase B-like 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnar-ccu True 73 tRNA 0.60 1 28245342 28245414

Neighbor

gene id symbol gene type direction distance location
pfkpa pfkp,pfkpa,LOC102201923,LOC100702375,LOC101472402,LOC102790125,LOC103143367,LOC103482255,LOC106911645,LOC106945829 coding downstream 44267 28160677 ~ 28201075 (-)
ccny ccny,LOC108431590,LOC107588043,LOC107739127 coding downstream 371733 27805814 ~ 27873609 (-)
LOC113545464 LOC108263316 coding downstream 449502 27792108 ~ 27795840 (-)
rmdn1 rmdn1,LOC107729932,LOC107756855,LOC107668150 coding downstream 925893 27309016 ~ 27319449 (-)
LOC113545483 ralyl,LOC108431401,LOC100330501 coding downstream 1224567 26850710 ~ 27020775 (-)
trnam-cau NA coding upstream 476 28245890 ~ 28245961 (-)
trnar-ccu_1 NA coding upstream 5642 28251056 ~ 28251128 (-)
trnar-ccu_2 NA coding upstream 10081 28255495 ~ 28255567 (-)
trnar-ccu_3 NA coding upstream 10831 28256245 ~ 28256317 (-)
wdr37 wdr37,LOC107687510 coding upstream 355624 28601038 ~ 28638002 (-)
G15852 NA non-coding downstream 38742 28206157 ~ 28206600 (-)
G15849 NA non-coding downstream 68496 28175684 ~ 28176846 (-)
G15842 NA non-coding downstream 158524 28085261 ~ 28086818 (-)
G15840 NA non-coding downstream 194296 28050808 ~ 28051046 (-)
G15528 LOC108266640,LOC108431537,LOC107600138,LOC107683489,LOC107593113,LOC107713778,LOC107687503,LOC107734392 non-coding downstream 856533 27386291 ~ 27388809 (-)
LOC117598396 NA non-coding upstream 171702 28417116 ~ 28434542 (-)
LOC113545501 NA non-coding upstream 191417 28436831 ~ 28453100 (-)
G16228 NA non-coding upstream 776223 29021637 ~ 29021844 (-)
G16291 NA non-coding upstream 963993 29209407 ~ 29212056 (-)
G16566 NA non-coding upstream 1628193 29873607 ~ 29953285 (-)
sugct sugct,LOC107687505,LOC107713787 other downstream 691836 27445558 ~ 27553506 (-)
f13a1a.1 LOC108263067 other downstream 1488099 26745018 ~ 26757243 (-)
LOC113545420 c1h18orf63 other downstream 1732548 26466811 ~ 26512794 (-)
fxyd7 LOC108429921,LOC103043934 other downstream 2480648 25758055 ~ 25764694 (-)
cadm4 cadm4,LOC107714698,LOC107657657,LOC107699529 other downstream 2539827 25547034 ~ 25705515 (-)
dipk2ab cunh3orf58,dia1b,LOC108272730,LOC107687522,LOC107741829,LOC107739121,LOC107588034 other upstream 1302752 29548166 ~ 29604238 (-)
pcolce2b pcolce2,LOC108272785,LOC107566300,LOC107675309,LOC107588030 other upstream 1552339 29797753 ~ 29814814 (-)
gpr158a gpr158 other upstream 1986909 30232323 ~ 30333220 (-)
G16900 NA other upstream 2395284 30640698 ~ 30642974 (-)
telo2 telo2 other upstream 2742709 30988123 ~ 31014649 (-)

Expression


Co-expression Network