trnar-ccu_3


Basic Information

Item Value
gene id trnar-ccu_3
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 28256245 ~ 28256317 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnar-ccu_3
GCCccagtggcctaatggataaggCACTGGCCTCCTAAGCCAGGgattgtgggttcgagtcccatctggggtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnar-ccu_3 True 73 tRNA 0.60 1 28256245 28256317

Neighbor

gene id symbol gene type direction distance location
trnar-ccu_2 NA coding downstream 678 28255495 ~ 28255567 (-)
trnar-ccu_1 NA coding downstream 5117 28251056 ~ 28251128 (-)
trnam-cau NA coding downstream 10284 28245890 ~ 28245961 (-)
trnar-ccu NA coding downstream 10831 28245342 ~ 28245414 (-)
pfkpa pfkp,pfkpa,LOC102201923,LOC100702375,LOC101472402,LOC102790125,LOC103143367,LOC103482255,LOC106911645,LOC106945829 coding downstream 55170 28160677 ~ 28201075 (-)
wdr37 wdr37,LOC107687510 coding upstream 344721 28601038 ~ 28638002 (-)
bdh1 bdh1,LOC108272495,LOC108431739,LOC107734382,LOC107683485 coding upstream 535545 28791862 ~ 28803226 (-)
gyg1b glyg,gyg1,LOC107713835,LOC107734383,LOC107687507,LOC107600139 coding upstream 551178 28807495 ~ 28833465 (-)
cpb1 cpb1 coding upstream 580015 28836332 ~ 28847982 (-)
agtr1b agtr1,LOC108431759 coding upstream 595044 28851361 ~ 28866487 (-)
G15852 NA non-coding downstream 49645 28206157 ~ 28206600 (-)
G15849 NA non-coding downstream 79399 28175684 ~ 28176846 (-)
G15842 NA non-coding downstream 169427 28085261 ~ 28086818 (-)
G15840 NA non-coding downstream 205199 28050808 ~ 28051046 (-)
G15528 LOC108266640,LOC108431537,LOC107600138,LOC107683489,LOC107593113,LOC107713778,LOC107687503,LOC107734392 non-coding downstream 867436 27386291 ~ 27388809 (-)
LOC117598396 NA non-coding upstream 160799 28417116 ~ 28434542 (-)
LOC113545501 NA non-coding upstream 180514 28436831 ~ 28453100 (-)
G16228 NA non-coding upstream 765320 29021637 ~ 29021844 (-)
G16291 NA non-coding upstream 953090 29209407 ~ 29212056 (-)
G16566 NA non-coding upstream 1617290 29873607 ~ 29953285 (-)
sugct sugct,LOC107687505,LOC107713787 other downstream 702739 27445558 ~ 27553506 (-)
f13a1a.1 LOC108263067 other downstream 1499002 26745018 ~ 26757243 (-)
LOC113545420 c1h18orf63 other downstream 1743451 26466811 ~ 26512794 (-)
fxyd7 LOC108429921,LOC103043934 other downstream 2491551 25758055 ~ 25764694 (-)
cadm4 cadm4,LOC107714698,LOC107657657,LOC107699529 other downstream 2550730 25547034 ~ 25705515 (-)
dipk2ab cunh3orf58,dia1b,LOC108272730,LOC107687522,LOC107741829,LOC107739121,LOC107588034 other upstream 1291849 29548166 ~ 29604238 (-)
pcolce2b pcolce2,LOC108272785,LOC107566300,LOC107675309,LOC107588030 other upstream 1541436 29797753 ~ 29814814 (-)
gpr158a gpr158 other upstream 1976006 30232323 ~ 30333220 (-)
G16900 NA other upstream 2384381 30640698 ~ 30642974 (-)
telo2 telo2 other upstream 2731806 30988123 ~ 31014649 (-)

Expression


Co-expression Network