G381829 (LOC108259779)



Basic Information


Item Value
gene id G381829
gene name LOC108259779
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 5975369 ~ 5976925 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU452709
GCCTATAGTCAAGTCACatcctgtaataataaaataaatgaagttttttttttttaaagagttctGGATTAAGGCACAGTCTGAGATGGTAGATCTTAGATATTGTGTGTGAGTAAGATCATTTGTCTGCTTTCTGTTGGATGATGTTTGTTGATGTGCCTCGTCAGCCCTGGAGAGGAGAAGAAGTTCTCTCCGCAGAATCGACACGGAAACACGTCGGGCGTTTTCGGAGCGCGCGCTGTGCTCGGAAGTTTCCGGGAAATTTCCGGAGACTCTTCCTTTGCCAGGACGATAGACTCGGGCAGACTTGCGAGGGTGAGATCCTGCCGTAACCCTGCAGCTTTCCGCTCATGGAGAGCGAGGTGTTTCCTCAGGTAAGCCTGTCGCCGGAACTTCTTGGCGCACTGAGTGCAACTGAACAGCGCTTCATCCTCAGAGCCCGAGTCGGAGTGCTCGGACTGGGTCGTGGCGCTCGCTCCGCTCATCGCATTCGGCTGATTTTCTTCTCCTTTGGGTTTATGCCAGCGCCGATGGGACGCCAGGTTAGCCGGGCAGCTGAAGGTTTTGTCGCACTCGGTGCAGCGGTACTCGACGCGCACAATGCGCGAGCACTTGTGGTGCGCCAGAGTGAGCGGGTCCGAGTATCTCTCTTTACACAGCTGGCAGATGAACTCCCCCAGATGGCTGCTCGCACCCTGCTTCGAGTCTTCCACAGGATCTTCCTTAATGCGTAGACCCAGAACTGGAGAGGTGGTGACTTCATCTCGACTCATCGCTTTTCTCTCTTGAGGAGGTTTGCGCTTTTTGGATGGGTTGCTTTTGGAGTTTGGTGCTGGTGCGGGTCGTTTTGCGGAGCTGGTTCCAGAGTCGACTTTCGTGCTCATTTCAGGGAGAGAAGGCGATACTGGAGATCCGTTGACCGCAAAACCGCCGAGAATGGGCTCGAGGAAAAGCTCAGCCCGACTCAGTGAGGCCGCAGAGCCCTGCTCACTGTGGTGCGTTGATGGATACTGGTTTGTGTAACCCTCGCTGTCTGGACGAGTCGGACTGAGCGAAGGAGCGCAGAATGATTCAGGCAGGCCTCCTAAACACACACGATTCGGCGTCCTTTGAACAATAACTGAGGGAAGAGTTGCAGCGCAGAAAGACTGAAGCCCTGGACTCGTCGCCTCGTCCTCGTCCCGCACTCTGTAGGACACTGCTCCAGGCTTTTTGGAGCGTTTTATCAGGAATCCCTTTGGCATGGTGGCGGCTGACGTCCAGTTAAAGTCGCTTTCTGTCGTCTCAGGGTTAAGAAGGAGCAAGTTGGATTCCCCGAAGTGTGAACAC
>TU452712
GCCTATAGTCAAGTCACatcctgtaataataaaataaatgaagttttttttttttaaagagttctGGATTAAGGCACAGTCTGAGATGGTAGATCTTAGATATTGTGTGTGAGTAAGATCATTTGTCTGCTTTCTGTTGGATGATGTTTGTTGATGTGCCTCGTCAGCCCTGGAGAGGAGAAGAAGTTCTCTCCGCAGAATCGACACGGAAACACGTCGGGCGTTTTCGGAGCGCGCGCTGTGCTCGGAAGTTTCCGGGAAATTTCCGGAGACTCTTCCTTTGCCAGGACGATAGACTCGGGCAGACTTGCGAGGGTGAGATCCTGCCGTAACCCTGCAGCTTTCCGCTCATGGAGAGCGAGGTGTTTCCTCAGGTAAGCCTGTCGCCGGAACTTCTTGGCGCACTGAGTGCAACTGAACAGCGCTTCATCCTCAGAGCCCGAGTCGGAGTGCTCGGACTGGGTCGTGGCGCTCGCTCCGCTCATCGCATTCGGCTGATTTTCTTCTCCTTTGGGTTTATGCCAGCGCCGATGGGACGCCAGGTTAGCCGGGCAGCTGAAGGTTTTGTCGCACTCGGTGCAGCGGTACTCGACGCGCACAATGCGCGAGCACTTGTGGTGCGCCAGAGTGAGCGGGTCCGAGTATCTCTCTTTACACAGCTGGCAGATGAACTCCCCCAGATGGCTGCTCGCACCCTGCTTCGAGTCTTCCACAGGATCTTCCTTAATGCGTAGACCCAGAACTGGAGAGGTGGTGACTTCATCTCGACTCATCGCTTTTCTCTCTTGAGGAGGTTTGCGCTTTTTGGATGGGTTGCTTTTGGAGTTTGGTGCTGGTGCGGGTCGTTTTGCGGAGCTGGTTCCAGAGTCGACTTTCGTGCTCATTTCAGGGAGAGAAGGCGATACTGGAGATCCGTTGACCGCAAAACCGCCGAGAATGGGCTCGAGGAAAAGCTCAGCCCGACTCAGTGAGGCCGCAGAGCCCTGCTCACTGTGGTGCGTTGATGGATACTGGTTTGTGTAACCCTCGCTGTCTGGACGAGTCGGACTGAGCGAAGGAGCGCAGAATGATTCAGGCAGGCCTCCTAAACACACACGATTCGGCGTCCTTTGAACAATAACTGAGGGAAGAGTTGCAGCGCAGAAAGACTGAAGCCCTGGACTCGTCGCCTCGTCCTCGTCCCGCACTCTGTAGGACACTGCTCCAGGCTTTTTGGAGCGTTTTATCAGGAATCCCTTTGGCATGGTGGCGGCTGACGTCCAGTTAAAGTCGCTTTCTGTCGTCTCAGGGTTAAGAAGGAGCAAGTTGGATTCCCCGAAGTGTGAACACCTCGAGACTTTTCTGAATTGATGCTCGCCGTCTCGCCCCTTTTTAAAGCCACCGGGCGCGTATTGTGCGTCAGTTAGGACGCAGATGGCTGCAATCCAGACGTCAATAGCAGGACCTGGCAACATGATCCACCCTGGGGTCTCAGAGAAGAGGAGCGGCAGATGTCAGCTTCACCCCCTCCCTCCCTTTTCTTCCCCTCCTTCTCGGAGCCATACACTCTGCCCcccc

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU452709 False 1329 TUCP 0.54 1 5975369 5976697
TU452712 True 1557 TUCP 0.54 1 5975369 5976925

Neighbor


gene id symbol gene type direction distance location
im:7154036 fermt3,LOC108259919,LOC103039629,LOC107730539,LOC107674895,LOC107702932,LOC107564073 coding upstream 16809 5943100 ~ 5958560 (+)
stip1 stip1,LOC107564074 coding upstream 36658 5927401 ~ 5938711 (+)
rps6ka4 rps6ka4,LOC108260350,LOC108427766,LOC103040978,LOC107758164,LOC107567284,LOC107698546,LOC107702937 coding upstream 174795 5780851 ~ 5800574 (+)
rom1a LOC108259789,LOC108427758,LOC107758165,LOC107567283,LOC107698544 coding upstream 197257 5775183 ~ 5778112 (+)
si:dkey-273o13.3 NA coding upstream 203907 5767961 ~ 5771462 (+)
LOC113531397 LOC108260433,LOC108430413,LOC107675420,LOC107550183 coding downstream 86884 6063809 ~ 6113449 (+)
pigl pigl coding downstream 366389 6343314 ~ 6370416 (+)
p2rx5 LOC108260045 coding downstream 412052 6388977 ~ 6405621 (+)
shpk shpk coding downstream 431099 6408024 ~ 6414180 (+)
LOC113531512 NA coding downstream 438478 6415403 ~ 6432002 (+)
G381822 NA non-coding upstream 33688 5941472 ~ 5941681 (+)
G381744 NA non-coding upstream 106714 5868448 ~ 5868655 (+)
G381730 NA non-coding upstream 172190 5802931 ~ 5803179 (+)
LOC113531273 NA non-coding upstream 228540 5745254 ~ 5746829 (+)
LOC113531675 NA non-coding upstream 229296 5745939 ~ 5746073 (+)
LOC117596274 NA non-coding downstream 8586 5985511 ~ 5987029 (+)
G381859 NA non-coding downstream 120153 6097078 ~ 6097982 (+)
G381860 NA non-coding downstream 126235 6103160 ~ 6103564 (+)
G381837 NA non-coding downstream 138621 6115546 ~ 6115861 (+)
G381833 NA non-coding downstream 140075 6117000 ~ 6187986 (+)
flrt1a LOC108259745,LOC108427774,LOC107741023,LOC107695997,LOC107702935,LOC107755656,LOC107571526 other upstream 62318 5853857 ~ 5913051 (+)
prune2 LOC108260020,LOC108437184,LOC107600585,LOC107691712,LOC107595999,LOC107728214,LOC107684379,LOC107730331 other upstream 1418966 4541729 ~ 4556403 (+)
kcmf1 kcmf1,LOC107691714,LOC107684340 other upstream 1503267 4457016 ~ 4472102 (+)
G380864 NA other upstream 1598354 4371713 ~ 4377015 (+)
si:ch211-202f5.3 NA other upstream 1645515 4326707 ~ 4329854 (+)
zmp:0000001168 sipa1,LOC108430456,LOC107742927 other downstream 13097 5990022 ~ 6052356 (+)
G381835 NA other downstream 200879 6177804 ~ 6180913 (+)
G381893 NA other downstream 246243 6223168 ~ 6242697 (+)
ubb ubb,LOC107567755,LOC107588961,LOC107387081 other downstream 403737 6380662 ~ 6383685 (+)
LOC113531592 rnf43 other downstream 985285 6962210 ~ 7058199 (+)

Expression



Co-expression Network