G381875 (ncor1)


Basic Information

Item Value
gene id G381875
gene name ncor1
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 6275707 ~ 6280046 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU452766
CCTTGCTGTTAAGCCAAGCTGGGGAAAGTTGATAATGTCATAGCACTGATTAAGGCACAAAGTAGATCACAAGACATTGCTGAGATGCAAGATGAAAGCAGGAGCCCTTGTGAGAGAGGCATTTAGCAGCAAGTTTTACTTTGGACTTTACACATGGATACTTTAGATTTTCTACATACAAAATAccctttgacaaaaaaaataaactatgtAAAGTAGTTTTACTTTACAGAAATGGCCTATAATCATATTTTCTTTATGCTCAGGATCTATGAATATACATATCTAGATAAGGTCAAGTGGGAATCCAGCATCTGACTCTCAGTTTATACCCAGTGACTAAACTTATCAATATAAATCCTATCAATCATGAATGTGTTCATCACTCACAATAGCTACACTTACTGCACAGGTTCTGTGAATAAATGATTGCAGGTCCCACATCATCTTCTAACACTGGGCATTAAAAGTCCAAAGCTATGGAGCTCAAACTCCTCATATCACCTGTATATGGAAATACTGAAAAAGTCTCTGTTTTAAAGTGAGAAATGTGACATTTGCACTGTACAATCAGAATGAACCATCAGAggccattaaaaaaataatcacgaTTTTGAGTGCAGGGGtagtttatgaataaatattggGAAGTGCTGGGTTCTACATCTAAAGGCTCCACTAAACACTAAATGCTGGCGTGACTAAATTTTACGTAGGAAGCAGAATGCTAGTCAGTCACTACAATTCATTGCAAGCAGCATTAGCATTTTGACTGAAATATTTCAGCAAacctcagtttaaaaaaaaaaaaaaaaaatagagaaCGGGAAAACACTGTGATGATAAACCTCATTAAGTGAGCATCTTGCTATTGTCAGAAACCAGCTGAGAAAGCCACATGAAACCCTCAGACCTCCAATACCACAACAGAAAGTAGTGAAAGCCCACAGAGAGACTGAAACTGCAAGCACCCAGATTAACAACATACATCGCTTCAAATCACTTTAAATTATGATTTTAGACTTGTTTTGTGGTTAGTGGTGAAGATACAGCCAAAATTGTAgtatacacatttttatgtagattttttttttatatacacattttttaatatagaaatcAACTGGGCTCTTCTCAGTTGTGGATATTTTACAATTGATAGATGGTTaattttaatgcttattttataCCTTTTGAAGTATAATTTAGTTACAATTATCACAGTTTAATAGGAGTAGCTTGCATGTCCTGGATGAAATAAGAGTCTAGTCTAACTGGGACGAAACTGTATCACCACTGACAGTTTTCTgcagtttttgcacatttaaaaatatttggtaAGTTCACAttcctttgcattttttttttttttttttttttgcccctctCCTATGCCAGGGGGTGTGTGCTCGCTTGCCCTAATCATTAATTTCATACATTCTTCATAACTACCCTTAAAATTTTGGAAGGATGGACTGTGCCATACTACTGCAATGAAATGCACAAGTCACTTTAATAttggtttttaataataataatattgtatgttttttatgaGCGTAACTGTAGATGGATATAGTTGCATTTCCATGAGAGATATGAAATTTCGCTGTATGTTACATGCAATGAAAATAAAGGTATTTAATTCAACATCCGTTTAGTAACTGGAATTTAATTCTCAGTGGATAATACACATTAGTTTAGGATGAATTCGTTGCTTCTCACTACATGCAAGCATTTGAGTCGATTTAAAATTCGCTCACAGATTTCTGACGTTGTTTCTCCCATTTTTCTTCTGCAGAATTGACGCTTCAGGTGCGTGTGATGTCATGTGGTACAACATCGACGGTTACTGGTCATGCAGCACGAAATGGCTGCATGAGTGCAAAAGCTGCAGAATCGACTTGctgcattaaaaaacaaattgcgattttaatctttttttcatgCAGACCTAATGAGATTTGGggcatgttttttaattgtataaacAAACAAGATAGTGAAGTTTCGGTATTTGTACTTCATTTAATTCTGCTTATTGCTGGTACTTCCAACATGTTGGCTTTGGGGTTTTCATTGACAAGACTGAGCTAAGAAAAAGCTTGTTAGTTAATTTATTTAGCTAAGATTTTCACCAACACTTTGCAGGCTAAGTTAGCTGCTTTGTTATTTTTAGGCTCCAGGGTAATAAGATTACTGATATACACCTAGATATTAATAAATGCCAAGTTTTGTTTTGGGAAAAGCAGCACGTGtagtttgttttaaatgtttttacggGTTTACAATTTTAACCTGTATACTAGCCACCACTAAGGTAACCACAGACATGGGTACAGAAAAACCCTTCAAGAGATGCTGCAGCCACCCCAAACACAGAATTGAATCACCTTAAACCACTCAGTTATTATGAGGTGAGGAATCGAGCTGACTCTAGACCAGTATTTTCACGTGGAGTGTGAAGCTCACTTCAGGAACAGGTGCAGGTGAGCAGGAGCAGTCAGGGGGAAGAGCAGAGAACAGCAGATGGAGGTGACCTAGGTCAGGCGCTACATACACAGCAGGGGATCTGAGGAAGGGGTGGGGATTGGGAGAGTTGGGGTGGGTCCTCACCTGGAGATATGGAGGCTGGGTTGAAAACCCTAGGAGGAAAAGGGGGCTGAGGTCCAGGGAGGTACGTGATGCGGTCCAAGTTAGGGGAACCTGTCCCCCCAGGGTGAGGCAACAGGATGGTGGGAGGCATCTGGGCTAGATCAATTATACCTTTTGCAGACAGAAGCAAAGGGACCAAAGGGTAAGCAACCACAACCAGGACTCACACTTCACTTTGTATTCGAGAGCCAGAAGCGTTTATGAGCTTCTACAGTACAGCAGCTGTTGCATTAGGATCAGACTTTCAATTTGGAATGAACAATGAACTGTACTATAAACTGATACTAGATGATGTTTTACAGATTAGATATAAGGTTAGGGCTGAAAGCTGATCAgaatacattacatcattaaTCAAACAAAAGTGCTGGTTAGTTTGTGGTTAGTTATGGTGCAGTGTGGAATAGTGGTTTAGGTAACATATGATCCAAAAGTCAGAGTCTCCACTCGAGCAACTGCACCCATATTCtgtgtaaattaaaatgtttaatttgtcaTATAGATGTCAGTATCATACTACGTAATataggaaaagaagaaaattaaggTGACTTTCTTTATTGTGACTCAaagttgtaaaatatataaaaatgaatgccTTTTTTGCGTTATGACACAGATGGCAAATCTGCCCTGATACAAGGAGCAGCCTCAGCCCTAAATTCAttgattttgatttaattttactcTCTTTTGTCCTGAAGGTCATTTGCTTCTGATCGTCTGGAAAAGGTTACCACTAGTTCACACGAGCACAAGGTCTACAGACTACAAATTTCTCCCTGTAAACATGTAGCCCCCTCACCTCTGGCTCCAGCAGGGTATGGGATGGCGATCTGCTGTTCCCTGGGTGACAGGCCTCTGGCGACCTCAGCCCGTGGGATGACCTGCATTTGCTGCGAGGTAATGTAATCATTCAAGATTGTCTGGCGCGTGTTCTCCATGGTGTACAGTTGGTAGGTGTTGGGGTATCCGGTAGGGGATGGCTGCCGTTGGAACATGTAAGCTGCGGAGAACAAGAACACAGGTTTACAGATATcgagaagaaaacaaacaaaaacaaacaaaaaaaaaaaccacagccaAGCAGTATATACCATGAAACAACATTGAAAAAAAGGCAGCTGTGACAGACGCTATTGACAGAAACTATACTGCAGACTGACAAGTAGGCAGTGGCGGTTTAGAGGTTAAGACTACTAAGGCTACTGATTAGAgttgtgagttcaaaccccAACACCACAAATCAGCCACTGTCAGGCTTGTGAACAACTCACTTAAACCACAACTCCATCAGTCATATCATGGCTGATCATACGCTCTGTCCCCGTCTACCTAACAAGCTGGCAGATGTGAAGTAAAGAATTTCGCTGTACTGTACTTGtaaatatgataataaaaacTTTCAAAGACCTCACTCAATATGGCTAGTACACTATATTTGACTGTTTAACTGTTAATGTCATCATTAGCATTACTTAAAAAAAGATGTATTATAATTTTTAGCAATTATTTTACAGTGGGAAAAAA

Function

symbol description
ncor1 Predicted to enable thyroid hormone receptor binding activity and transcription corepressor activity. Acts upstream of or within anterior/posterior pattern specification; hindbrain development; and neutrophil differentiation. Is expressed in several structures, including epidermis; head; liver; pleuroperitoneal region; and ventricular system. Orthologous to human NCOR1 (nuclear receptor corepressor 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU452766 True 4185 lncRNA 0.39 2 6275707 6280046

Neighbor

gene id symbol gene type direction distance location
LOC113531397 LOC108260433,LOC108430413,LOC107675420,LOC107550183 coding upstream 162258 6063809 ~ 6113449 (+)
im:7154036 fermt3,LOC108259919,LOC103039629,LOC107730539,LOC107674895,LOC107702932,LOC107564073 coding upstream 317147 5943100 ~ 5958560 (+)
stip1 stip1,LOC107564074 coding upstream 336996 5927401 ~ 5938711 (+)
rps6ka4 rps6ka4,LOC108260350,LOC108427766,LOC103040978,LOC107758164,LOC107567284,LOC107698546,LOC107702937 coding upstream 475133 5780851 ~ 5800574 (+)
rom1a LOC108259789,LOC108427758,LOC107758165,LOC107567283,LOC107698544 coding upstream 497595 5775183 ~ 5778112 (+)
pigl pigl coding downstream 63268 6343314 ~ 6370416 (+)
p2rx5 LOC108260045 coding downstream 108931 6388977 ~ 6405621 (+)
shpk shpk coding downstream 127978 6408024 ~ 6414180 (+)
LOC113531512 NA coding downstream 135357 6415403 ~ 6432002 (+)
LOC113531597 LOC108260041 coding downstream 156754 6436800 ~ 6451433 (+)
G381895 LOC108260329,LOC108260327 non-coding upstream 24634 6226565 ~ 6251073 (+)
G381868 NA non-coding upstream 41141 6209445 ~ 6234566 (+)
G381833 NA non-coding upstream 87721 6117000 ~ 6187986 (+)
G381836 NA non-coding upstream 92234 6136273 ~ 6183473 (+)
G381832 LOC103036068,LOC108430458,LOC108260056,LOC106567579,LOC105005922 non-coding upstream 140682 6124195 ~ 6135025 (+)
G382122 NA non-coding downstream 172317 6452363 ~ 6452575 (+)
G382138 NA non-coding downstream 221969 6502015 ~ 6513170 (+)
G382146 NA non-coding downstream 256985 6537031 ~ 6537231 (+)
G382148 NA non-coding downstream 269756 6549802 ~ 6550804 (+)
G382205 NA non-coding downstream 295933 6575979 ~ 6576182 (+)
G381893 NA other upstream 33010 6223168 ~ 6242697 (+)
G381835 NA other upstream 94794 6177804 ~ 6180913 (+)
zmp:0000001168 sipa1,LOC108430456,LOC107742927 other upstream 223351 5990022 ~ 6052356 (+)
G381829 LOC108259779 other upstream 298782 5975369 ~ 5976925 (+)
flrt1a LOC108259745,LOC108427774,LOC107741023,LOC107695997,LOC107702935,LOC107755656,LOC107571526 other upstream 362656 5853857 ~ 5913051 (+)
ubb ubb,LOC107567755,LOC107588961,LOC107387081 other downstream 100616 6380662 ~ 6383685 (+)
LOC113531592 rnf43 other downstream 682164 6962210 ~ 7058199 (+)
LOC113531088 NA other downstream 980207 7260253 ~ 7261090 (+)
dpm2 dpm2,LOC107664400 other downstream 1258312 7538358 ~ 7544114 (+)
spns3 LOC108260438,LOC108260072 other downstream 1862537 8142583 ~ 8161257 (+)

Expression


Co-expression Network