G381895 (LOC108260329,LOC108260327)


Basic Information

Item Value
gene id G381895
gene name LOC108260329,LOC108260327
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 6226565 ~ 6251073 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU452790
TTGCATAGATGCGATTATTTGATGCATCtggaataaacaaaaatgaaacaaaaaaaaagtgttaaaataaactCTCGTTCTAAAATCTATTATATTGTGCAGTTGAAGCATCACTCACTGGAATGAgcacattttataaaacatattaaaaccaCAAGAAGAGTGAGAAAagcagctcctcctcctgctatGAACAGCCATTTCGCTACCAAAATATTCTCATCAGTCCATcctaccaaaaaaaataaatacaaatagaaatgtGAACAGAAATTTGTTTGTTGTATCCAGAACATCATGAATCAGTAGCatacaacgtgtgtgtgtgtatcctagTACAAAACTTACttagctgtagctgtagctcCTGATAAGCAATCCTGCAGTTGGTCCCATTAAACAGCTCACAGTGGTAGAGACTCAGATCATACGGCTGCACTTTCTGAAGGAGAATGGAGAAGTTTCCTGATTCAGAGAGCTTAGGAAACGTCTTGATACGTCCACCTTTATAGTTCCAGAACTTCGCTACTCCCTGTAGAGTGATCTCCACTAGATTGTGTATTGTTGTGTTCCTCTGACTCCACACTACTGCTATATCTGCAGTCTTATCTGATCCGAGGAGATTTGGATTAAAGTTACACGGCAGCAGGACGTCAGACTGGAGCTCAGCAGAAATGTTAATGCTTATTAAAAGTTCACTTTTGCACAGATTTTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU452790 True 717 lncRNA 0.38 2 6226565 6251073

Neighbor

gene id symbol gene type direction distance location
LOC113531397 LOC108260433,LOC108430413,LOC107675420,LOC107550183 coding upstream 113116 6063809 ~ 6113449 (+)
im:7154036 fermt3,LOC108259919,LOC103039629,LOC107730539,LOC107674895,LOC107702932,LOC107564073 coding upstream 268005 5943100 ~ 5958560 (+)
stip1 stip1,LOC107564074 coding upstream 287854 5927401 ~ 5938711 (+)
rps6ka4 rps6ka4,LOC108260350,LOC108427766,LOC103040978,LOC107758164,LOC107567284,LOC107698546,LOC107702937 coding upstream 425991 5780851 ~ 5800574 (+)
rom1a LOC108259789,LOC108427758,LOC107758165,LOC107567283,LOC107698544 coding upstream 448453 5775183 ~ 5778112 (+)
pigl pigl coding downstream 92241 6343314 ~ 6370416 (+)
p2rx5 LOC108260045 coding downstream 137904 6388977 ~ 6405621 (+)
shpk shpk coding downstream 156951 6408024 ~ 6414180 (+)
LOC113531512 NA coding downstream 164330 6415403 ~ 6432002 (+)
LOC113531597 LOC108260041 coding downstream 185727 6436800 ~ 6451433 (+)
G381833 NA non-coding upstream 38579 6117000 ~ 6187986 (+)
G381836 NA non-coding upstream 43092 6136273 ~ 6183473 (+)
G381832 LOC103036068,LOC108430458,LOC108260056,LOC106567579,LOC105005922 non-coding upstream 91540 6124195 ~ 6135025 (+)
G381837 NA non-coding upstream 110704 6115546 ~ 6115861 (+)
G381860 NA non-coding upstream 123001 6103160 ~ 6103564 (+)
G381875 ncor1 non-coding downstream 24634 6275707 ~ 6280046 (+)
G382122 NA non-coding downstream 201290 6452363 ~ 6452575 (+)
G382138 NA non-coding downstream 250942 6502015 ~ 6513170 (+)
G382146 NA non-coding downstream 285958 6537031 ~ 6537231 (+)
G382148 NA non-coding downstream 298729 6549802 ~ 6550804 (+)
G381835 NA other upstream 45652 6177804 ~ 6180913 (+)
zmp:0000001168 sipa1,LOC108430456,LOC107742927 other upstream 174209 5990022 ~ 6052356 (+)
G381829 LOC108259779 other upstream 249640 5975369 ~ 5976925 (+)
flrt1a LOC108259745,LOC108427774,LOC107741023,LOC107695997,LOC107702935,LOC107755656,LOC107571526 other upstream 313514 5853857 ~ 5913051 (+)
prune2 LOC108260020,LOC108437184,LOC107600585,LOC107691712,LOC107595999,LOC107728214,LOC107684379,LOC107730331 other upstream 1670162 4541729 ~ 4556403 (+)
ubb ubb,LOC107567755,LOC107588961,LOC107387081 other downstream 129589 6380662 ~ 6383685 (+)
LOC113531592 rnf43 other downstream 711137 6962210 ~ 7058199 (+)
LOC113531088 NA other downstream 1009180 7260253 ~ 7261090 (+)
dpm2 dpm2,LOC107664400 other downstream 1287285 7538358 ~ 7544114 (+)
spns3 LOC108260438,LOC108260072 other downstream 1891510 8142583 ~ 8161257 (+)

Expression


Co-expression Network