Gene
RNA
| Item | Value |
|---|---|
| gene id | G382148 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047621.1 |
| NCBI id | CM018567.1 |
| chromosome length | 18889892 |
| location | 6549802 ~ 6550804 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU453119 | True | 881 | lncRNA | 0.48 | 2 | 6549802 | 6550804 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| tbx16l | LOC108260093 | coding | upstream | 4067 | 6537778 ~ 6545735 (+) |
| eral1 | eral1 | coding | upstream | 16908 | 6522164 ~ 6532894 (+) |
| LOC113531597 | LOC108260041 | coding | upstream | 98369 | 6436800 ~ 6451433 (+) |
| LOC113531512 | NA | coding | upstream | 117800 | 6415403 ~ 6432002 (+) |
| shpk | shpk | coding | upstream | 135622 | 6408024 ~ 6414180 (+) |
| LOC113531298 | myo19,LOC107591502 | coding | downstream | 83166 | 6633970 ~ 6653902 (+) |
| c1qbp | c1qbp | coding | downstream | 107249 | 6658053 ~ 6662250 (+) |
| LOC113531024 | LOC108260100 | coding | downstream | 118128 | 6668932 ~ 6687976 (+) |
| srrm3 | srrm3 | coding | downstream | 140232 | 6691036 ~ 6773907 (+) |
| hspb1 | hspb1 | coding | downstream | 227188 | 6777992 ~ 6784388 (+) |
| G382146 | NA | non-coding | upstream | 12571 | 6537031 ~ 6537231 (+) |
| G382138 | NA | non-coding | upstream | 36632 | 6502015 ~ 6513170 (+) |
| G382122 | NA | non-coding | upstream | 97227 | 6452363 ~ 6452575 (+) |
| G381875 | ncor1 | non-coding | upstream | 269756 | 6275707 ~ 6280046 (+) |
| G381895 | LOC108260329,LOC108260327 | non-coding | upstream | 298729 | 6226565 ~ 6251073 (+) |
| G382205 | NA | non-coding | downstream | 25175 | 6575979 ~ 6576182 (+) |
| G382207 | NA | non-coding | downstream | 28309 | 6579113 ~ 6580610 (+) |
| G382257 | NA | non-coding | downstream | 115835 | 6666639 ~ 6668385 (+) |
| G382274 | NA | non-coding | downstream | 256375 | 6807179 ~ 6809541 (+) |
| G382292 | NA | non-coding | downstream | 259549 | 6810353 ~ 6810567 (+) |
| ubb | ubb,LOC107567755,LOC107588961,LOC107387081 | other | upstream | 166117 | 6380662 ~ 6383685 (+) |
| G381893 | NA | other | upstream | 307105 | 6223168 ~ 6242697 (+) |
| G381835 | NA | other | upstream | 368889 | 6177804 ~ 6180913 (+) |
| zmp:0000001168 | sipa1,LOC108430456,LOC107742927 | other | upstream | 497446 | 5990022 ~ 6052356 (+) |
| G381829 | LOC108259779 | other | upstream | 572877 | 5975369 ~ 5976925 (+) |
| LOC113531592 | rnf43 | other | downstream | 411406 | 6962210 ~ 7058199 (+) |
| LOC113531088 | NA | other | downstream | 709449 | 7260253 ~ 7261090 (+) |
| dpm2 | dpm2,LOC107664400 | other | downstream | 987554 | 7538358 ~ 7544114 (+) |
| spns3 | LOC108260438,LOC108260072 | other | downstream | 1591779 | 8142583 ~ 8161257 (+) |
| G383217 | NA | other | downstream | 1631587 | 8182391 ~ 8213107 (+) |
