G382207


Basic Information

Item Value
gene id G382207
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 6579113 ~ 6580610 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU453190
ACAGCACTAATAATCTTTTCGATTTATGTTCACGAGAATATCTTATCTGTACACATGAACAAAGGTGGAGCTTCTTTAAAATGTGCACACATAAAAGTTAGTCACATGTCTCTAGGAAAGGTGTCAGTGTTTTACGCTTTCACTCCGAGTCCAAAGTGCAAAAACCAATTCTACATGACATCAAGGAATTCAAATGCCTCCTCGGGTTGGATAAAAATCATGCACTGGATGCAGGCTTTAAAAAGCACGAGCACTTAACCATTTGTTCGTATGCAATTTATAAGCTCAGGCTCTGCACTTCAGAGGTACTTTAGACTCCTGATTGGTTGAAAATCAAAGAATTTACAGAAAGTTACACATTATGAGAAACACATCTACATACAATCTAAAGTTAGAAtacttataaaaaataatacaataatcaTGTGCTAACACTTAGCGCAATTATAATGCATTGTAGGGAGTCGTATAAAGTCTTATAAAACATCTGTAATGTCTAATAATACAGCCGCTTATCATTGGTTATAATTGGGATGTGAGGGCAAACTCCATGTAGATAAACGCAGATGGAAGTTGTATTTCAGAGCGGAAAGCaaattgttttcatttgtaAGGGCAAACCTAATAACTGCTTGtgaaatattcattatatttaatatctcTGAATTATAGCTACTAGCGAAAAAGCCAAATTATGTCAAGTCTAATTGAGAAAAACTATAAGAAACAATTTCCAGAATTTAGTTACATGCTTTTAGTTTGGGAATATATTAGTATAgttataagtatatatatatatatacaagtgTAGTTTCAAATCACTTCCAAGTAGCCACTATTCTAAAACAATATCGATGGTTTAGAAGCCTTTATATGAgattaattaatgcattataattgCAAGTGTTTCTTACACCTATTTGCTGCACACTGAGTGACAgtgtttttgtctcatttcaaaACAGATATGTCAtatgacctaaaaaaaaaaaaaaacctgtgcaaCCGACGGCATTCTGGTCTGTGGTCATAAGTGGGAACCATTTTTCAGCTCTACATGGTCCCTGTTTCCATTTTCCAGTTTCCGTCTACTATAAAATTTCCCATCACGTTGAGGCAGCAGTGTTTGTTTAAATTGGAACGGTACCAATcatatctctttctctccttctctattttctccccctctcttACGGACCAGTTCCCTCTCACACAGCTTCAGATTTTCAGATTTGCTACGTTTTCCTCaaaccacacacaaacccaaTTCCCTTTCAATTCCATGTTTTAAAACTATTTGTACAGTTTGTCCAGCAGGTGTTGCCAGAGAGACACTGTTTGCTGCTGGTTCTGTCTTCTCCGCTCTCCATCGATGTGTATCCGTTCCGTCACTAGGACACCTGCTCCACGGGCCGCAGCTGCACATCTCCGATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU453190 True 1434 lncRNA 0.37 2 6579113 6580610

Neighbor

gene id symbol gene type direction distance location
tbx16l LOC108260093 coding upstream 33378 6537778 ~ 6545735 (+)
eral1 eral1 coding upstream 46219 6522164 ~ 6532894 (+)
LOC113531597 LOC108260041 coding upstream 127680 6436800 ~ 6451433 (+)
LOC113531512 NA coding upstream 147111 6415403 ~ 6432002 (+)
shpk shpk coding upstream 164933 6408024 ~ 6414180 (+)
LOC113531298 myo19,LOC107591502 coding downstream 53360 6633970 ~ 6653902 (+)
c1qbp c1qbp coding downstream 77443 6658053 ~ 6662250 (+)
LOC113531024 LOC108260100 coding downstream 88322 6668932 ~ 6687976 (+)
srrm3 srrm3 coding downstream 110426 6691036 ~ 6773907 (+)
hspb1 hspb1 coding downstream 197382 6777992 ~ 6784388 (+)
G382205 NA non-coding upstream 2931 6575979 ~ 6576182 (+)
G382148 NA non-coding upstream 28309 6549802 ~ 6550804 (+)
G382146 NA non-coding upstream 41882 6537031 ~ 6537231 (+)
G382138 NA non-coding upstream 65943 6502015 ~ 6513170 (+)
G382122 NA non-coding upstream 126538 6452363 ~ 6452575 (+)
G382257 NA non-coding downstream 86029 6666639 ~ 6668385 (+)
G382274 NA non-coding downstream 226569 6807179 ~ 6809541 (+)
G382292 NA non-coding downstream 229743 6810353 ~ 6810567 (+)
LOC117596241 NA non-coding downstream 230508 6811118 ~ 6815375 (+)
G382351 supt4h1,LOC107654296,LOC107563417 non-coding downstream 371109 6951719 ~ 6954928 (+)
ubb ubb,LOC107567755,LOC107588961,LOC107387081 other upstream 195428 6380662 ~ 6383685 (+)
G381893 NA other upstream 336416 6223168 ~ 6242697 (+)
G381835 NA other upstream 398200 6177804 ~ 6180913 (+)
zmp:0000001168 sipa1,LOC108430456,LOC107742927 other upstream 526757 5990022 ~ 6052356 (+)
G381829 LOC108259779 other upstream 602188 5975369 ~ 5976925 (+)
LOC113531592 rnf43 other downstream 381600 6962210 ~ 7058199 (+)
LOC113531088 NA other downstream 679643 7260253 ~ 7261090 (+)
dpm2 dpm2,LOC107664400 other downstream 957748 7538358 ~ 7544114 (+)
spns3 LOC108260438,LOC108260072 other downstream 1561973 8142583 ~ 8161257 (+)
G383217 NA other downstream 1601781 8182391 ~ 8213107 (+)

Expression


Co-expression Network