G382351 (supt4h1,LOC107654296,LOC107563417)


Basic Information

Item Value
gene id G382351
gene name supt4h1,LOC107654296,LOC107563417
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 6951719 ~ 6954928 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU453360
CGCCTGCCTTGAAATTTCCTATTCTTTGCCACTTAGCCACCCAGCTGTCTTCAGGACTCATCATTGCAATGACACCATCAAAGGAGGAGCTCGTGCATTCATAAACCATCTCCCGGTTCCCCTTCATTTGCAGGTAGGACTCACAGTTATCACAGCCATCATACTCGAACTGGTCAATAGTCTTGACCAGAGAACATAGCAGACAAGCCCGCAGATGACGCAGATCCTTTGGTACAGTCTCCAAGGACATTGTGTAACCTAAATTAATACACTTTAttccacaaaatgtttttttttttttaatttgataaaCTCAATAGAGTAGCTCAATAGTCGACTTGGCGTTTCCGGCGACTGTAATGACGTAATAAACTTGCGTCGGCGGTCTTT

Function

symbol description
supt4h1 Predicted to enable RNA polymerase II complex binding activity. Predicted to be involved in chromatin organization; mRNA processing; and regulation of transcription elongation from RNA polymerase II promoter. Predicted to act upstream of or within positive regulation of DNA-templated transcription, elongation. Predicted to be located in nucleus. Predicted to be part of DSIF complex. Orthologous to human SUPT4H1 (SPT4 homolog, DSIF elongation factor subunit).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU453360 True 390 lncRNA 0.43 4 6951719 6954928

Neighbor

gene id symbol gene type direction distance location
LOC113531112 tspoap1 coding upstream 19800 6831684 ~ 6931919 (+)
hspb1 hspb1 coding upstream 167331 6777992 ~ 6784388 (+)
srrm3 srrm3 coding upstream 177812 6691036 ~ 6773907 (+)
LOC113531024 LOC108260100 coding upstream 263743 6668932 ~ 6687976 (+)
c1qbp c1qbp coding upstream 289469 6658053 ~ 6662250 (+)
mtmr4 mtmr4 coding downstream 125179 7080107 ~ 7149766 (+)
ca4a LOC108259876 coding downstream 208371 7163299 ~ 7179897 (+)
gusb gusb,LOC107591494 coding downstream 269782 7224710 ~ 7238694 (+)
rplp0 rplp0,LOC107654305 coding downstream 320626 7275554 ~ 7279408 (+)
LOC113531674 NA coding downstream 321917 7276845 ~ 7276973 (+)
LOC117596241 NA non-coding upstream 136344 6811118 ~ 6815375 (+)
G382292 NA non-coding upstream 141152 6810353 ~ 6810567 (+)
G382274 NA non-coding upstream 142178 6807179 ~ 6809541 (+)
G382257 NA non-coding upstream 283334 6666639 ~ 6668385 (+)
G382207 NA non-coding upstream 371109 6579113 ~ 6580610 (+)
G382380 NA non-coding downstream 111885 7066813 ~ 7067761 (+)
G382606 NA non-coding downstream 153798 7108726 ~ 7109709 (+)
LOC117596228 NA non-coding downstream 199666 7154594 ~ 7157229 (+)
G382646 NA non-coding downstream 431582 7386510 ~ 7388236 (+)
G382667 LOC108260439 non-coding downstream 493983 7448911 ~ 7450445 (+)
ubb ubb,LOC107567755,LOC107588961,LOC107387081 other upstream 568034 6380662 ~ 6383685 (+)
G381893 NA other upstream 709022 6223168 ~ 6242697 (+)
G381835 NA other upstream 770806 6177804 ~ 6180913 (+)
zmp:0000001168 sipa1,LOC108430456,LOC107742927 other upstream 899363 5990022 ~ 6052356 (+)
G381829 LOC108259779 other upstream 974794 5975369 ~ 5976925 (+)
LOC113531592 rnf43 other downstream 7282 6962210 ~ 7058199 (+)
LOC113531088 NA other downstream 305325 7260253 ~ 7261090 (+)
dpm2 dpm2,LOC107664400 other downstream 583430 7538358 ~ 7544114 (+)
spns3 LOC108260438,LOC108260072 other downstream 1187655 8142583 ~ 8161257 (+)
G383217 NA other downstream 1227463 8182391 ~ 8213107 (+)

Expression


Co-expression Network