G382380


Basic Information

Item Value
gene id G382380
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 7066813 ~ 7067761 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU453390
acttCAGAATTTCAGGACAAGTTCATTAATTATGCATAGTAATGATTAAGTATATTACACAGAAGCACACAGATTTTATAGAGGATATATGACAATCAAGAATGAGAGGATATACCTTCATTTCCAGGATTTAGAGGAGACGCAAATTCAAATATAATCTGTGGAAAAGGTTATGAGTAAATATGCATTTGATACTGAATTATCCATATCTTTTCATAAGTTACTCACCTCTACAGCTTACCTTGTTAGTTATAGTTTGAGTTTTTTTGATAGTGACTGATGCTTTTAAGCGTCAGCTTTATAAGGAacatctctctttcattcttatATTGAGTCAAACTCTGTGCATTATGTGAATGGTGTTTGTGTCTTTGTCCATACACACACCTTGTCCTGTCTGATGACGTGGGACACCAGCTCTCTGCTACCTGTCTCCAAGCCTTTATAGGCCAGAGGCTCAAAGCCCATCTTATCACAGTAGAAGACTGCCGCCTAGAGGAGCACACAGGTAAACCTGGAAGTTTCAGCAGTTGTCATTTTCGTTCATTTTCTGTTCTATGAGTCTCTGATGGgacatggtggttattttttacTCAGGCATGGCCACAAATTAAAATACTGAAGCCACAACTTAATATTTTGAGGCCACATACTAAGTATCTCATTGTGTAGCTTGAGCTCATAATTTAATGTGTTGTGGAAAGTTATACTTGTCAATTATTTGTGTTGACCTTGACAATTGAATGTTATACCAATGTATCAACACCCATGGCTCCACTATGTCTTTATGTATCATTCTAAGATTGAAGTGTAATATTATTAGTTATTGCCATGCTTATGGTCATGTGGCCACAATGGTCTGATTCAATTGATTTCTTTGAGTTTcacttaattt

Function

GO: NA

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU453390 True 895 lncRNA 0.36 2 7066813 7067761

Neighbor

gene id symbol gene type direction distance location
LOC113531112 tspoap1 coding upstream 134894 6831684 ~ 6931919 (+)
hspb1 hspb1 coding upstream 282425 6777992 ~ 6784388 (+)
srrm3 srrm3 coding upstream 292906 6691036 ~ 6773907 (+)
LOC113531024 LOC108260100 coding upstream 378837 6668932 ~ 6687976 (+)
c1qbp c1qbp coding upstream 404563 6658053 ~ 6662250 (+)
mtmr4 mtmr4 coding downstream 12346 7080107 ~ 7149766 (+)
ca4a LOC108259876 coding downstream 95538 7163299 ~ 7179897 (+)
gusb gusb,LOC107591494 coding downstream 156949 7224710 ~ 7238694 (+)
rplp0 rplp0,LOC107654305 coding downstream 207793 7275554 ~ 7279408 (+)
LOC113531674 NA coding downstream 209084 7276845 ~ 7276973 (+)
G382351 supt4h1,LOC107654296,LOC107563417 non-coding upstream 111885 6951719 ~ 6954928 (+)
LOC117596241 NA non-coding upstream 251438 6811118 ~ 6815375 (+)
G382292 NA non-coding upstream 256246 6810353 ~ 6810567 (+)
G382274 NA non-coding upstream 257272 6807179 ~ 6809541 (+)
G382257 NA non-coding upstream 398428 6666639 ~ 6668385 (+)
G382606 NA non-coding downstream 40965 7108726 ~ 7109709 (+)
LOC117596228 NA non-coding downstream 86833 7154594 ~ 7157229 (+)
G382646 NA non-coding downstream 318749 7386510 ~ 7388236 (+)
G382667 LOC108260439 non-coding downstream 381150 7448911 ~ 7450445 (+)
G382686 NA non-coding downstream 430005 7497766 ~ 7500585 (+)
LOC113531592 rnf43 other upstream 8614 6962210 ~ 7058199 (+)
ubb ubb,LOC107567755,LOC107588961,LOC107387081 other upstream 683128 6380662 ~ 6383685 (+)
G381893 NA other upstream 824116 6223168 ~ 6242697 (+)
G381835 NA other upstream 885900 6177804 ~ 6180913 (+)
zmp:0000001168 sipa1,LOC108430456,LOC107742927 other upstream 1014457 5990022 ~ 6052356 (+)
LOC113531088 NA other downstream 192492 7260253 ~ 7261090 (+)
dpm2 dpm2,LOC107664400 other downstream 470597 7538358 ~ 7544114 (+)
spns3 LOC108260438,LOC108260072 other downstream 1074822 8142583 ~ 8161257 (+)
G383217 NA other downstream 1114630 8182391 ~ 8213107 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other downstream 1491065 8558826 ~ 8565257 (+)

Expression


Co-expression Network