G382646


Basic Information

Item Value
gene id G382646
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 7386510 ~ 7388236 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU453677
GCCAGGATTAGCAAACAGGAGTGTGCTTTGAGGTGTACCACATGTAACAGACAAACAAAGAACATGTATTCAAGTGAGATCAGACACCATCGTCACCTGCACTGCTGTTTTCTAGCAGCTAGCCAGAACTTGCTCTCACATCTGTAGCAGTGTGTTGGAAGGTGATCGGGATACCACCGAGGTACCTGTTTGTCATGCTGCTCCTCGTTTTCCCAGCTGCTCTCGGAGAAGAGCTCGGTGCCGCAACGAGAGAGATGCACAGCCTCCACGTTATTCTCCCCGTCTGGCACAGGAGTCTGGA

Function

GO:

id name namespace
GO:0015103 inorganic anion transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU453677 True 301 lncRNA 0.51 2 7386510 7388236

Neighbor

gene id symbol gene type direction distance location
cita cit,LOC108429728 coding upstream 3126 7295229 ~ 7383384 (+)
LOC113531518 rab35,LOC108259874,LOC108429727,LOC103036303,LOC105902527 coding upstream 95373 7279646 ~ 7291137 (+)
rplp0 rplp0,LOC107654305 coding upstream 107102 7275554 ~ 7279408 (+)
LOC113531673 NA coding upstream 108783 7277599 ~ 7277727 (+)
LOC113531674 NA coding upstream 109537 7276845 ~ 7276973 (+)
pkn3 pkn3,LOC108429731,LOC107587363,LOC107597294,LOC107737478,LOC107681845 coding downstream 23869 7412105 ~ 7434020 (+)
fam102ab fam102a,fam102ab,LOC107681850,LOC107748511,LOC107664417 coding downstream 99580 7487816 ~ 7536970 (+)
pip5kl1 pip5kl1 coding downstream 158224 7546460 ~ 7563680 (+)
sh3glb2b sh3glb2,sh3glb2b,LOC108429737,LOC107748508 coding downstream 177551 7565787 ~ 7603329 (+)
LOC113531275 NA coding downstream 229743 7617979 ~ 7620332 (+)
LOC117596228 NA non-coding upstream 229281 7154594 ~ 7157229 (+)
G382606 NA non-coding upstream 276801 7108726 ~ 7109709 (+)
G382380 NA non-coding upstream 318749 7066813 ~ 7067761 (+)
G382351 supt4h1,LOC107654296,LOC107563417 non-coding upstream 431582 6951719 ~ 6954928 (+)
LOC117596241 NA non-coding upstream 571135 6811118 ~ 6815375 (+)
G382667 LOC108260439 non-coding downstream 60675 7448911 ~ 7450445 (+)
G382686 NA non-coding downstream 109530 7497766 ~ 7500585 (+)
G382929 NA non-coding downstream 257900 7646136 ~ 7646471 (+)
G382931 NA non-coding downstream 261073 7649309 ~ 7649523 (+)
G382932 NA non-coding downstream 261385 7649621 ~ 7650073 (+)
LOC113531088 NA other upstream 125420 7260253 ~ 7261090 (+)
LOC113531592 rnf43 other upstream 328311 6962210 ~ 7058199 (+)
ubb ubb,LOC107567755,LOC107588961,LOC107387081 other upstream 1002825 6380662 ~ 6383685 (+)
G381893 NA other upstream 1143813 6223168 ~ 6242697 (+)
G381835 NA other upstream 1205597 6177804 ~ 6180913 (+)
dpm2 dpm2,LOC107664400 other downstream 150122 7538358 ~ 7544114 (+)
spns3 LOC108260438,LOC108260072 other downstream 754347 8142583 ~ 8161257 (+)
G383217 NA other downstream 794155 8182391 ~ 8213107 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other downstream 1170590 8558826 ~ 8565257 (+)
gig2o LOC108260416 other downstream 1202074 8590310 ~ 8592381 (+)

Expression


Co-expression Network