G382686


Basic Information

Item Value
gene id G382686
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 7497766 ~ 7500585 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU453724
ATACCCATGATATCTCAGGAATTGTGATGAACTAACGGCTGTAACACAGATGGAAGGCGTCCCGATTCAGTTTTATGAATTACTGAAAGTCTCACTTTTACATGGAAAATGTGAACATAGCAGTGTGGTATCAAATCTGACCAAATCATCAGCCATCCAAGAGGAGTTATCTGTTTAAAACCCACTTTAACAAATCCTGGAAACAGAACAGGCGTTAAATGACCTAAATGTTTTGGTtatgttaaactttagctgtttaaaaatgtctgcGATACTTAAATCGAAACAGCTGGAATTCTTCTGAAGAGACGGACGATTTGCAAATTCTGATCTCTGCTGCGTTGTTTAGCAGGCTgctgtgtttcttttcttccctctctttccttccttccttctttctttctttctttctttctttctctgtaatatgGGACTGTTATTATTCtgcataaagaaagaaacattgaTAGAGCCCGGGAATCCGAGTCTGGAAGAGAGCACCAAAAAGAAGTAGGTTAAACGTAGTCCTGGGGGAataggaggagagaggaggcgAAGGCACAACTTTTTGACTCTTCTTACAAGTGAACAGTATTCTTGTTACTGTTAAAATAGTTCCATTTCAAAGCATCATGCTTGAGCGGAGAAACTGCTTATATTTTAAGCGACCCAGGTAGTGTGGAGGAATATAGCTCCAAGCCTGcaaacaaagacagacagaactCTTCCTCCTGTTGTGTCTTTACTTGCAACTTTTGCTCAGTCACAGGTTGTGCAAAGGTCAAGGTTCACAGGTCAAATTGACAAAGTATTCCACGTCCCGAGTGTTGGTTTATTGAGCTGCAGATGTGGAGTCGACTCTCAGTTAACCCTCTCTACCCTTCCCCCATTCCGCACTTCCAGAACCagtttaaaggaatactccggCATTGTTCAACGTAAactctatccactgtatgtgtAACGTATATACAATTTCCACAGACAAGAATCTCAAAATATTTCCTggcactgagagagaaaaacagaaaatgtcttGAGTCCAAACTCTCTAATAatagaagtctaagggcagttgttgaattctgtcAATAAATGATTATCCAAAGGACAATTTTGTAGAACGTTTTTATGAATTATTGATCTAAATCTGTATGTCATCAATCAATTGTCTGATGATATATGAATACTATTTATACGGTGTTACCTCAGTGTTAGAAGGTTTCATCGATataatgttttcttcttcttttattttttatatattttttattttttgccagtATGAGTGTATGTTTTTTGGTACTTGTCCATACCATACCGAACTTAGTATTACTCGTTTTATATAGCTCTGTTTgcttttttatcagtttaaatAGTTGCTATGAAAAGTGCACACATGCATGTAAAAGTGCTTAGGATACTAGGCTCGTTCTTTATAACGTTAGCTAGTTGatttttagctagctacagtAGTTAGgtagggttgcagtggagaGTGGGTTTTGTGTGATTTCAGTTCAGCTGTAAGtacttttttgtgtttgcttgtttgttttttttgttttcattgtgtcAGAACGACCAATAGCAGCTGATCATcaaagaacaacatactgggtaaGAGCCGGTATTGTCTTCCTTCACCATTGATTTATGTTGTTAGTGTAGCAGTTGTAGTTTTGAATTTTCATCCTGTTGTCGCATAGATTAAAGTTTATTAATGGAGTTCAACACCTGCCCCTAGATATCTAACATATAACATTATATCTAACATAAGTGAGTTTCAAGTTAACAGgtttttctgttatttctttattccagaaattgttttgaaattattattcatGTTATTCACATATAAAACTCAGATCTAGTTGATAGTGATtaggttggaaaaaaaaaatgttcgaGTATTCCTTTAAAGGTCTGTCTTTATAAGGGTGAAAAGGTGAAGTGTGTGCTTTGAAAATGCATGAGTAAATATTAGTGTGTTACTGTCGTAATACAAATTCAGCTGTCGATGTTTAATAGGATCAAAGTTAGCAAGGATTCTGTTAGCTTAATTAAGTTTATGTGAGTATTAACCTTCTATTTTGCTTGGAGAAATATAAATCCTGAAATCTTTGTTCCAGTAACTTACAAGCGTGTGTTCTTGTGGatgagtgggtgtgtgagagatcGTTGCTTATGATTGCTATGCTCATAAAATAAAACCCTTGTTCCTGTGACTCAAACCACTGTTAAATCTGTGGATTATTTATCATGAGTTTGTGTTTGTCATGGGTGGTTGTGGGAGAGAGTTTCAGAATGAAACTACTATTGGGACAGTTGGGAAATTTTAAATAAGATTTGTATGACATTGAAAGAGGAAAGGGCCAGAGTGCATATTTCCCATGGGGAGGCGAAGAGATTTAGTTAATAACGAATGAACTTGTATGGTAGGCAGGTTCAGACTTCTCGGATTACTAAAATGCCGTATGCAACTATTGTCCTTGTTGTGTGACACTTAAGCAGCATTGCGTAAAGTAAATACATCAAGCAAGACTGGAAAGTTTCCAGCCAGCATTTCGATTTCCGCCAGCTTTCCCTGATTTCATGGATTCATGTTTTTCATCGCCTGTGTGATCACAATCGCAGTGCCAGATCAGTGTGTTTACTCTCAAGgaggggaatttttttttttttttttttttttttttctgttctcttctttGCTCCAGATCCTGATCAGGGAGTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU453724 True 2742 lncRNA 0.37 2 7497766 7500585

Neighbor

gene id symbol gene type direction distance location
pkn3 pkn3,LOC108429731,LOC107587363,LOC107597294,LOC107737478,LOC107681845 coding upstream 63746 7412105 ~ 7434020 (+)
cita cit,LOC108429728 coding upstream 114382 7295229 ~ 7383384 (+)
LOC113531518 rab35,LOC108259874,LOC108429727,LOC103036303,LOC105902527 coding upstream 206629 7279646 ~ 7291137 (+)
LOC113531673 NA coding upstream 220039 7277599 ~ 7277727 (+)
LOC113531674 NA coding upstream 220793 7276845 ~ 7276973 (+)
pip5kl1 pip5kl1 coding downstream 45875 7546460 ~ 7563680 (+)
sh3glb2b sh3glb2,sh3glb2b,LOC108429737,LOC107748508 coding downstream 65202 7565787 ~ 7603329 (+)
LOC113531275 NA coding downstream 117394 7617979 ~ 7620332 (+)
p2rx1 p2rx1 coding downstream 270313 7770898 ~ 7797351 (+)
LOC113531515 LOC108259923 coding downstream 599262 8099847 ~ 8104105 (+)
G382667 LOC108260439 non-coding upstream 47321 7448911 ~ 7450445 (+)
G382646 NA non-coding upstream 109530 7386510 ~ 7388236 (+)
LOC117596228 NA non-coding upstream 340537 7154594 ~ 7157229 (+)
G382606 NA non-coding upstream 388057 7108726 ~ 7109709 (+)
G382380 NA non-coding upstream 430005 7066813 ~ 7067761 (+)
G382929 NA non-coding downstream 145551 7646136 ~ 7646471 (+)
G382931 NA non-coding downstream 148724 7649309 ~ 7649523 (+)
G382932 NA non-coding downstream 149036 7649621 ~ 7650073 (+)
G382942 NA non-coding downstream 162282 7662867 ~ 7665688 (+)
G383067 NA non-coding downstream 404749 7905334 ~ 7909226 (+)
LOC113531088 NA other upstream 236676 7260253 ~ 7261090 (+)
LOC113531592 rnf43 other upstream 439567 6962210 ~ 7058199 (+)
ubb ubb,LOC107567755,LOC107588961,LOC107387081 other upstream 1114081 6380662 ~ 6383685 (+)
G381893 NA other upstream 1255069 6223168 ~ 6242697 (+)
G381835 NA other upstream 1316853 6177804 ~ 6180913 (+)
dpm2 dpm2,LOC107664400 other downstream 37773 7538358 ~ 7544114 (+)
spns3 LOC108260438,LOC108260072 other downstream 641998 8142583 ~ 8161257 (+)
G383217 NA other downstream 681806 8182391 ~ 8213107 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other downstream 1058241 8558826 ~ 8565257 (+)
gig2o LOC108260416 other downstream 1089725 8590310 ~ 8592381 (+)

Expression


Co-expression Network