dpm2 (dpm2,LOC107664400)


Basic Information

Item Value
gene id dpm2
gene name dpm2,LOC107664400
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 7538358 ~ 7544114 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU453732
CGGAAGCGCAAACTACAGGAAATACCTCAGGCAGTGACGTGTTCGACATGGCAACTGGAGCAGATCAAGCTGTCGGTTTGGGCCTCGTTGGCTTCAGTCTATTACTGTTCACATACTACACCATATGGGTTATAGTGCTGCCATTTGTCGACAGCGATCACGTGATCCACAGTTACTTTCTTCCTCGAGAGTACTCTGTCATACTTCCTGGCATAGCAGCATTGATACTATTACTCTGTGTTGGTACCTTCATAGGAATAGTCACCTGGAAGAATCGTAAACCAAAGAAAGTCGACTAGGAATCTCCAGTCACTGTCATTCAGCTGCCCGAAACAAGGACATGACGAAATCTCAACCTGCGTATCAGCTCCTGTACTTAAGTCTCATGTATAACTGTTCTCTGAAGCTTCCTGGCTTTTCATGTAGCAGACAGTTTAGCCCTGAGGAAATGACCAATTAGTGTAAAGGAGCCAATTAGAGACCACAAGGGGTAaaaatatttactcatttcTGTATATGTGGAAATCTGTGGAAATTTCATTCCACTGACATGAAAATACGCATTACTGTCCTATCTGCTGTTACATTATACACAGTTGCTATGTTCAGTAACCACTAAAACATTGCTCTTATGCATTTCTGCCATCCTATtagactgtaaataaacataaatgtgtGCTAGTAAATGATAAATAGGGATAACATGCTCAATGCTGATTGATGAGATGTTAATGAGAGAAGGTACACAAATTTCAGGGGTGTTTTGTAGACGCt
>XM_026922257.2
TTGTGTCCTCTgaaaaactacatttcccatcttTCAGTCGGACGTGGACCGGAACCCGGAAGCGCAAACTACAGGAAATACCTCAGGCAGTGACGTGTTCGACATGGCAACTGGAGCAGATCAAGCTGTCGGTTTGGGCCTCGTTGGCTTCAGTCTATTACTGTTCACATACTACACCATATGGGTTATAGTGCTGCCATTTGTCGACAGCGATCACGTGATCCACAGTTACTTTCTTCCTCGAGAGTACTCTGTCATACTTCCTGGCATAGCAGCATTGATACTATTACTCTGTGTTGGTACCTTCATAGGAATAGTCACCTGGAAGAATCGTAAACCAAAGAAAGTCGACTAGGAATCTCCAGTCACTGTCATTCAGCTGCCCGAAACAAGGACATGACGAAATCTCAACCTGCGTATCAGCTCCTGTACTTAAGTCTCATGTATAACTGTTCTCTGAAGCTTCCTGGCTTTTCATGTAGCAGACAGTTTAGCCCTGAGGAAATGACCAATTAGTGTAAAGGAGCCAATTAGAGACCACAAGGGGTAaaaatatttactcatttcTGTATATGTGGAAATCTGTGGAAATTTCATTCCACTGACATGAAAATACGCATTACTGTCCTATCTGCTGTTACATTATACACAGTTGCTATGTTCAGTAACCACTAAAACATTGCTCTTATGCATTTCTGCCATCCTATtagactgtaaataaacataaatgtgtGCTAGTAAATGATAAATAGGGATAACATGCTCAATGCTGATTGATGAGATGTTAATGAGAGAAGGTACACAAATTTCAGGGGTGTTTTGTAGACGCtgcaataaataattattacataaacattt

Function

symbol description
dpm2 Predicted to enable enzyme regulator activity. Acts upstream of or within muscle structure development. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of endoplasmic reticulum membrane. Predicted to be part of dolichol-phosphate-mannose synthase complex. Is expressed in brain; cloaca; pronephric duct; solid lens vesicle; and vertical myoseptum. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Iu. Orthologous to human DPM2 (dolichyl-phosphate mannosyltransferase subunit 2, regulatory).

NR:

description
dolichol phosphate-mannose biosynthesis regulatory protein isoform X2

GO:

id name namespace
GO:0009059 macromolecule biosynthetic process biological_process
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component

KEGG:

id description
K09658 DPM2; dolichol phosphate-mannose biosynthesis regulatory protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU453732 False 774 lncRNA 0.41 4 7538414 7544086
XM_026922257.2 True 858 mRNA 0.41 4 7538358 7544114

Neighbor

gene id symbol gene type direction distance location
fam102ab fam102a,fam102ab,LOC107681850,LOC107748511,LOC107664417 coding upstream 1388 7487816 ~ 7536970 (+)
pkn3 pkn3,LOC108429731,LOC107587363,LOC107597294,LOC107737478,LOC107681845 coding upstream 104338 7412105 ~ 7434020 (+)
cita cit,LOC108429728 coding upstream 154974 7295229 ~ 7383384 (+)
LOC113531518 rab35,LOC108259874,LOC108429727,LOC103036303,LOC105902527 coding upstream 247221 7279646 ~ 7291137 (+)
rplp0 rplp0,LOC107654305 coding upstream 258950 7275554 ~ 7279408 (+)
pip5kl1 pip5kl1 coding downstream 2346 7546460 ~ 7563680 (+)
sh3glb2b sh3glb2,sh3glb2b,LOC108429737,LOC107748508 coding downstream 21673 7565787 ~ 7603329 (+)
LOC113531275 NA coding downstream 73865 7617979 ~ 7620332 (+)
p2rx1 p2rx1 coding downstream 226784 7770898 ~ 7797351 (+)
LOC113531515 LOC108259923 coding downstream 555733 8099847 ~ 8104105 (+)
G382686 NA non-coding upstream 37773 7497766 ~ 7500585 (+)
G382667 LOC108260439 non-coding upstream 87913 7448911 ~ 7450445 (+)
G382646 NA non-coding upstream 150122 7386510 ~ 7388236 (+)
LOC117596228 NA non-coding upstream 381129 7154594 ~ 7157229 (+)
G382606 NA non-coding upstream 428649 7108726 ~ 7109709 (+)
G382929 NA non-coding downstream 102022 7646136 ~ 7646471 (+)
G382931 NA non-coding downstream 105195 7649309 ~ 7649523 (+)
G382932 NA non-coding downstream 105507 7649621 ~ 7650073 (+)
G382942 NA non-coding downstream 118753 7662867 ~ 7665688 (+)
G383067 NA non-coding downstream 361220 7905334 ~ 7909226 (+)
LOC113531088 NA other upstream 277268 7260253 ~ 7261090 (+)
LOC113531592 rnf43 other upstream 480159 6962210 ~ 7058199 (+)
ubb ubb,LOC107567755,LOC107588961,LOC107387081 other upstream 1154673 6380662 ~ 6383685 (+)
G381893 NA other upstream 1295661 6223168 ~ 6242697 (+)
G381835 NA other upstream 1357445 6177804 ~ 6180913 (+)
spns3 LOC108260438,LOC108260072 other downstream 598469 8142583 ~ 8161257 (+)
G383217 NA other downstream 638277 8182391 ~ 8213107 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other downstream 1014712 8558826 ~ 8565257 (+)
gig2o LOC108260416 other downstream 1046196 8590310 ~ 8592381 (+)
G383625 LOC108260351 other downstream 1220788 8764902 ~ 8775134 (+)

Expression


Co-expression Network