G382929


Basic Information

Item Value
gene id G382929
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 7646136 ~ 7646471 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU454007
ATACAATGCAAGACAGAACACAAAGTAGTTGTCTATTCAGTTTGAGACCTTACAGTAATATACGTCCAGAACTCTTCCCATGGAGACAACCCCTCCTCTCTAACACCATTTACTCGATTAAGCATGGATTCATAGGATGCAATTTCTACCATTGCACTGGCCCACTCTTTCAATTCTGGGGCTTTCACTGTCTTCCAGTGTCTCAAAATAATCCTACTTGCCGTTGTAATACATACcataataacagaaaatacacGCTTTGAAACATTAGGTATTTGAGACTTGTCGCCTAATAAACACAATTTAGAGGTTAAAGATATTTCGGAGCCATACCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU454007 True 336 lncRNA 0.39 1 7646136 7646471

Neighbor

gene id symbol gene type direction distance location
LOC113531275 NA coding upstream 25804 7617979 ~ 7620332 (+)
sh3glb2b sh3glb2,sh3glb2b,LOC108429737,LOC107748508 coding upstream 42807 7565787 ~ 7603329 (+)
pip5kl1 pip5kl1 coding upstream 82456 7546460 ~ 7563680 (+)
fam102ab fam102a,fam102ab,LOC107681850,LOC107748511,LOC107664417 coding upstream 109166 7487816 ~ 7536970 (+)
pkn3 pkn3,LOC108429731,LOC107587363,LOC107597294,LOC107737478,LOC107681845 coding upstream 212116 7412105 ~ 7434020 (+)
p2rx1 p2rx1 coding downstream 124427 7770898 ~ 7797351 (+)
LOC113531515 LOC108259923 coding downstream 453376 8099847 ~ 8104105 (+)
spns2 LOC108260118,LOC108429747,LOC107597455,LOC106602867 coding downstream 551008 8197479 ~ 8269630 (+)
ftr82 LOC108260233,LOC108429749,LOC103035912,LOC107664526,LOC107712362,LOC107597500 coding downstream 673466 8319937 ~ 8325759 (+)
ift22 ift22,LOC107597505,LOC107712360,LOC107664522,LOC107677430,LOC107722786 coding downstream 681705 8328176 ~ 8332329 (+)
G382686 NA non-coding upstream 145551 7497766 ~ 7500585 (+)
G382667 LOC108260439 non-coding upstream 195691 7448911 ~ 7450445 (+)
G382646 NA non-coding upstream 257900 7386510 ~ 7388236 (+)
LOC117596228 NA non-coding upstream 488907 7154594 ~ 7157229 (+)
G382606 NA non-coding upstream 536427 7108726 ~ 7109709 (+)
G382931 NA non-coding downstream 2838 7649309 ~ 7649523 (+)
G382932 NA non-coding downstream 3150 7649621 ~ 7650073 (+)
G382942 NA non-coding downstream 16396 7662867 ~ 7665688 (+)
G383067 NA non-coding downstream 258863 7905334 ~ 7909226 (+)
G383128 NA non-coding downstream 339141 7985612 ~ 7986368 (+)
dpm2 dpm2,LOC107664400 other upstream 102022 7538358 ~ 7544114 (+)
LOC113531088 NA other upstream 385046 7260253 ~ 7261090 (+)
LOC113531592 rnf43 other upstream 587937 6962210 ~ 7058199 (+)
ubb ubb,LOC107567755,LOC107588961,LOC107387081 other upstream 1262451 6380662 ~ 6383685 (+)
G381893 NA other upstream 1403439 6223168 ~ 6242697 (+)
spns3 LOC108260438,LOC108260072 other downstream 496112 8142583 ~ 8161257 (+)
G383217 NA other downstream 535920 8182391 ~ 8213107 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other downstream 912355 8558826 ~ 8565257 (+)
gig2o LOC108260416 other downstream 943839 8590310 ~ 8592381 (+)
G383625 LOC108260351 other downstream 1118431 8764902 ~ 8775134 (+)

Expression


Co-expression Network